RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 KIF5BP33176 963 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 SLC4A3P48751 1232 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 CCT2P78371 535 aaKnown RBP16.63■□□□□ 0.25
SF3B1-204ENST00000414963 GRM4Q14833 912 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 RTN1Q16799 776 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 CCDC83Q8IWF9 413 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 ANKRD13AQ8IZ07 590 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 MYL10Q9BUA6 226 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 SH2D4AQ9H788 454 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 NCOA5Q9HCD5 579 aaKnown RBP16.63■□□□□ 0.25
SF3B1-204ENST00000414963 RBM28Q9NW13 759 aaKnown RBP16.63■□□□□ 0.25
SF3B1-204ENST00000414963 FZD1Q9UP38 647 aa16.63■□□□□ 0.25
SF3B1-204ENST00000414963 PALM3A6NDB9 673 aaPredicted RBP16.62■□□□□ 0.25
SF3B1-204ENST00000414963 CTDNEP1O95476 244 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 RXRAP19793 462 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 CDC27P30260 824 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 ADD1P35611 737 aaKnown RBP16.62■□□□□ 0.25
SF3B1-204ENST00000414963 ATP2B2Q01814 1243 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 PRKG1Q13976 671 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 VGLL4Q14135 290 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 NTRK3Q16288 839 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 LRRC47Q8N1G4 583 aaKnown RBP16.62■□□□□ 0.25
SF3B1-204ENST00000414963 ACER1Q8TDN7 264 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 NUP133Q8WUM0 1156 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 GMCL1Q96IK5 515 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 KIAA1683Q9H0B3 1180 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 SNCAIPQ9Y6H5 919 aa16.62■□□□□ 0.25
SF3B1-204ENST00000414963 F5H6K3 240 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 HSP90AA1P07900 732 aaKnown RBP16.61■□□□□ 0.25
SF3B1-204ENST00000414963 PDHBP11177 359 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 SMARCA1P28370 1054 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 GNAQP50148 359 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 KLRC3Q07444 240 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 CPLX2Q6PUV4 134 aaKnown RBP16.61■□□□□ 0.25
SF3B1-204ENST00000414963 RAB11FIP4Q86YS3 637 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 CTCFLQ8NI51 663 aaPredicted RBP16.61■□□□□ 0.25
SF3B1-204ENST00000414963 SMARCC2Q8TAQ2 1214 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 DCAF4Q8WV16 495 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 LZTS2Q9BRK4 669 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 AS3MTQ9HBK9 375 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 CWC22Q9HCG8 908 aaKnown RBP16.61■□□□□ 0.25
SF3B1-204ENST00000414963 MAD2L2Q9UI95 211 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 CSADQ9Y600 493 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 PAPPA2Q9BXP8 1791 aa16.61■□□□□ 0.25
SF3B1-204ENST00000414963 CDKL5O76039 1030 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 IFNAR1P17181 557 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 ECE1P42892 770 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 FMR1Q06787 632 aaKnown RBP eCLIP16.6■□□□□ 0.252e-7■■□□□ 13.9
SF3B1-204ENST00000414963 FUT2Q10981 343 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 TTLL12Q14166 644 aaPredicted RBP16.6■□□□□ 0.25
SF3B1-204ENST00000414963 ASPRV1Q53RT3 343 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 TMTC3Q6ZXV5 915 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 CCDC144CPQ8IYA2 1237 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 ZNF280CQ8ND82 737 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 NSUN7Q8NE18 718 aaKnown RBP16.6■□□□□ 0.25
SF3B1-204ENST00000414963 VCPKMTQ9H867 229 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 GBA2Q9HCG7 927 aaPredicted RBP16.6■□□□□ 0.25
SF3B1-204ENST00000414963 GOPCQ9HD26 462 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.6■□□□□ 0.25
SF3B1-204ENST00000414963 AFG3L2Q9Y4W6 797 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 ZHX2Q9Y6X8 837 aa16.6■□□□□ 0.25
SF3B1-204ENST00000414963 DOCK1Q14185 1865 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 USP17L10C9JJH3 530 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 CPLX1O14810 134 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 CELF2O95319 508 aaKnown RBP16.59■□□□□ 0.25
SF3B1-204ENST00000414963 NDUFB10O96000 172 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 PARP1P09874 1014 aaKnown RBP16.59■□□□□ 0.25
SF3B1-204ENST00000414963 BACE1P56817 501 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 ZNF543Q08ER8 600 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 GPATCH4Q5T3I0 446 aaKnown RBP16.59■□□□□ 0.25
SF3B1-204ENST00000414963 CST9Q5W186 159 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 SLFN13Q68D06 897 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 MOB2Q70IA6 237 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 ERO1BQ86YB8 467 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 C2orf69Q8N8R5 385 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 SMC1BQ8NDV3 1235 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 RBM46Q8TBY0 533 aaKnown RBP16.59■□□□□ 0.25
SF3B1-204ENST00000414963 PASKQ96RG2 1323 aa16.59■□□□□ 0.25
SF3B1-204ENST00000414963 SPDYE5A6NIY4 337 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 C19orf81C9J6K1 198 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 UBE2Q2LH0YL09 131 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 TOMM70O94826 608 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 DDIT3P35638 169 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 USP14P54578 494 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 HMGN5P82970 282 aaKnown RBP16.58■□□□□ 0.24
SF3B1-204ENST00000414963 PPATQ06203 517 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 SPP2Q13103 211 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 USP17L2Q6R6M4 530 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 NBPF11Q86T75 865 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 CCDC84Q86UT8 332 aaPredicted RBP16.58■□□□□ 0.24
SF3B1-204ENST00000414963 STAG2Q8N3U4 1231 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 LPAR1Q92633 364 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 SMC3Q9UQE7 1217 aa16.58■□□□□ 0.24
SF3B1-204ENST00000414963 ATAD5Q96QE3 1844 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 STK36Q9NRP7 1315 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 KLRF2D3W0D1 207 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 YY1P25490 414 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 SLC1A4P43007 532 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 SH3D19Q5HYK7 790 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 KIAA1755Q5JYT7 1200 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms