RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 TTLL6Q8N841 843 aa13.39□□□□□ -0.27
PTPRF-205ENST00000414879 CERKQ8TCT0 537 aa13.39□□□□□ -0.27
PTPRF-205ENST00000414879 FNBP1Q96RU3 617 aa13.39□□□□□ -0.27
PTPRF-205ENST00000414879 AMNQ9BXJ7 453 aa13.39□□□□□ -0.27
PTPRF-205ENST00000414879 SERPINB13Q9UIV8 391 aa13.39□□□□□ -0.27
PTPRF-205ENST00000414879 CTAGE15A4D2H0 777 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 SASH1O94885 1247 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 CTAGE8P0CG41 777 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 FAM47AQ5JRC9 791 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 PODNQ7Z5L7 613 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 CTAGE6Q86UF2 777 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 CTAGE4Q8IX94 777 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 AK8Q96MA6 479 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 GPHNQ9NQX3 736 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-205ENST00000414879 NDUFB9Q9Y6M9 179 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 SOS2Q07890 1332 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-205ENST00000414879 PRAMEF22A3QJZ6 481 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 CTAGE9A4FU28 777 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 IFFO1Q0D2I5 559 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 KIAA0825Q8IV33 1275 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 ARHGAP23Q9P227 1491 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 CUL4AQ13619 759 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 NOC4LQ9BVI4 516 aaKnown RBP13.38□□□□□ -0.27
PTPRF-205ENST00000414879 IFNKQ9P0W0 207 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 PI4KBQ9UBF8 816 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 SYNRGQ9UMZ2 1314 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 USP17L3A6NCW0 530 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 USP17L4A6NCW7 530 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 MYL1P05976 194 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 XRCC6P12956 609 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRF-205ENST00000414879 NOLC1Q14978 699 aaKnown RBP eCLIP13.38□□□□□ -0.271e-6■■□□□ 11.5
PTPRF-205ENST00000414879 CDC37L1Q7L3B6 337 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 USP17L1Q7RTZ2 530 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 SDR42E1Q8WUS8 393 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 TPCN1Q9ULQ1 816 aa13.38□□□□□ -0.27
PTPRF-205ENST00000414879 TBC1D8BQ0IIM8 1120 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 DGKHQ86XP1 1220 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 CTNNBL1Q8WYA6 563 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-205ENST00000414879 VTI1AQ96AJ9 217 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 SEC31BQ9NQW1 1179 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 DYNC1I1O14576 645 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 FMNL1O95466 1100 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-205ENST00000414879 MYCNP04198 464 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-205ENST00000414879 MSL1Q68DK7 614 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 CSGALNACT2Q8N6G5 542 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 CCDC51Q96ER9 411 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 PPP6R2O75170 966 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 CFBP00751 764 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 DALRD3Q5D0E6 543 aaKnown RBP13.37□□□□□ -0.27
PTPRF-205ENST00000414879 APOA5Q6Q788 366 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 PI4K2BQ8TCG2 481 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 VPS54Q9P1Q0 977 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 MTMR6Q9Y217 621 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 CYP21A2P08686 494 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 OR52Z1P0C646 297 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 ARHGEF6Q15052 776 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 ALX1Q15699 326 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 NCAPH2Q6IBW4 605 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 CENPHQ9H3R5 247 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 MRVI1Q9Y6F6 885 aa13.37□□□□□ -0.27
PTPRF-205ENST00000414879 KIF20BQ96Q89 1820 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 JAK2O60674 1132 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 IFNAR1P17181 557 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 CCNA1P78396 465 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 NKX1-1Q15270 411 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 DOK7Q18PE1 504 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 OTUD7BQ6GQQ9 843 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 NSMFQ6X4W1 530 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 CEP128Q6ZU80 1094 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 TRMT1LQ7Z2T5 733 aaKnown RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 SIRT2Q8IXJ6 389 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 EXOC8Q8IYI6 725 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 SEC62Q99442 399 aaKnown RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 NAP1L3Q99457 506 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 TSPYL1Q9H0U9 437 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 PCDHB13Q9Y5F0 798 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 GAS7O60861 476 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 RABL6Q3YEC7 729 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 FAM160B2Q86V87 743 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 HACE1Q8IYU2 909 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 MYL10Q9BUA6 226 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 RTEL1Q9NZ71 1219 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 RIMS1Q86UR5 1692 aaKnown RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 LMBRD1Q9NUN5 540 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 SLC8A3P57103 927 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 HERC4Q5GLZ8 1057 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-205ENST00000414879 TIGD1Q96MW7 591 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 SPC25Q9HBM1 224 aa13.36□□□□□ -0.27
PTPRF-205ENST00000414879 ITSN1Q15811 1721 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 ANKRD26Q9UPS8 1709 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 TMTC1Q8IUR5 882 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 CDHR1Q96JP9 859 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 SPATA31A1Q5TZJ5 1347 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 ATP2A1O14983 1001 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 RRP9O43818 475 aaKnown RBP13.35□□□□□ -0.27
PTPRF-205ENST00000414879 YWHAEP62258 255 aaKnown RBP13.35□□□□□ -0.27
PTPRF-205ENST00000414879 HLTFQ14527 1009 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPRF-205ENST00000414879 CLCN1P35523 988 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 BMS1Q14692 1282 aaKnown RBP13.35□□□□□ -0.27
PTPRF-205ENST00000414879 TAX1BP1Q86VP1 789 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms