RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 NYAP2Q9P242 653 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 ZNF112Q9UJU3 913 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 CLEC11AQ9Y240 323 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 UBE2Q2LH0YL09 131 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 TRAF5O00463 557 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 GRM4Q14833 912 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 SUPT20HL1Q3ZLR7 823 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 STAG2Q8N3U4 1231 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 PHKBQ93100 1093 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 KLRG1Q96E93 195 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 HOOK2Q96ED9 719 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 USP17L5A8MUK1 530 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 CPLX1O14810 134 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 CTNND1O60716 968 aaKnown RBP11.29□□□□□ -0.6
RIF1-202ENST00000414861 ASNSP08243 561 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 CALM1P0DP23 149 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 CALM2P0DP24 149 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 CALM3P0DP25 149 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 PDHBP11177 359 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 FDPSP14324 419 aaKnown RBP11.29□□□□□ -0.6
RIF1-202ENST00000414861 FUT2Q10981 343 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 CCDC82Q8N4S0 544 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 LLPHQ9BRT6 129 aaKnown RBP11.29□□□□□ -0.6
RIF1-202ENST00000414861 MAD2L2Q9UI95 211 aa11.29□□□□□ -0.6
RIF1-202ENST00000414861 DHX16O60231 1041 aaKnown RBP11.28□□□□□ -0.6
RIF1-202ENST00000414861 USP2O75604 605 aaPredicted RBP11.28□□□□□ -0.6
RIF1-202ENST00000414861 GOLGA8HP0CJ92 632 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 SLC35G1Q2M3R5 365 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 USP17L2Q6R6M4 530 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 TMTC3Q6ZXV5 915 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 CDC37L1Q7L3B6 337 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 NBPF11Q86T75 865 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.28□□□□□ -0.6
RIF1-202ENST00000414861 CTCFLQ8NI51 663 aaPredicted RBP11.28□□□□□ -0.6
RIF1-202ENST00000414861 MKL1Q969V6 931 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 MOB2Q70IA6 237 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 LDHDQ86WU2 507 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 CPVLQ9H3G5 476 aa11.28□□□□□ -0.6
RIF1-202ENST00000414861 CWC22Q9HCG8 908 aaKnown RBP11.28□□□□□ -0.6
RIF1-202ENST00000414861 FRMPD2Q68DX3 1309 aaPredicted RBP11.27□□□□□ -0.6
RIF1-202ENST00000414861 CNTNAP5Q8WYK1 1306 aa11.27□□□□□ -0.6
RIF1-202ENST00000414861 PTPRFP10586 1907 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 SNHG28P0DPA3 235 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 IFNAR1P17181 557 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 KIAA1755Q5JYT7 1200 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 PPP4R3BQ5MIZ7 849 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 SCYL3Q8IZE3 742 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 SRBD1Q8N5C6 995 aaKnown RBP11.27□□□□□ -0.61
RIF1-202ENST00000414861 AIFM3Q96NN9 605 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 MAP3K14Q99558 947 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 CCDC196A0A1B0GTZ2 297 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 PALM3A6NDB9 673 aaPredicted RBP11.27□□□□□ -0.61
RIF1-202ENST00000414861 FOSBP53539 338 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.27□□□□□ -0.61
RIF1-202ENST00000414861 SLC26A6Q9BXS9 759 aa11.27□□□□□ -0.61
RIF1-202ENST00000414861 RBM28Q9NW13 759 aaKnown RBP11.27□□□□□ -0.61
RIF1-202ENST00000414861 ORC3Q9UBD5 711 aaPredicted RBP11.27□□□□□ -0.61
RIF1-202ENST00000414861 hCG_1642624A0A1W2PR95 340 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 RAD21O60216 631 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 NDUFB10O96000 172 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 PARP1P09874 1014 aaKnown RBP11.26□□□□□ -0.61
RIF1-202ENST00000414861 KIF5BP33176 963 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 HMGN5P82970 282 aaKnown RBP11.26□□□□□ -0.61
RIF1-202ENST00000414861 VGLL4Q14135 290 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 ZYXQ15942 572 aaKnown RBP11.26□□□□□ -0.61
RIF1-202ENST00000414861 SPICE1Q8N0Z3 855 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 NUP88Q99567 741 aaPredicted RBP11.26□□□□□ -0.61
RIF1-202ENST00000414861 ARHGEF10LQ9HCE6 1279 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 TMX2Q9Y320 296 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 CYTH3O43739 400 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 CDKL5O76039 1030 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 PTPRAP18433 802 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 SYT1P21579 422 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 DGKZQ13574 1117 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 PPP2R5BQ15173 497 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 NOL9Q5SY16 702 aaKnown RBP11.26□□□□□ -0.61
RIF1-202ENST00000414861 SLFN13Q68D06 897 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 CPLX2Q6PUV4 134 aaKnown RBP11.26□□□□□ -0.61
RIF1-202ENST00000414861 GMCL1P1Q8NEA9 526 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 GJB4Q9NTQ9 266 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 ZDHHC9Q9Y397 364 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 SNCAIPQ9Y6H5 919 aa11.26□□□□□ -0.61
RIF1-202ENST00000414861 F5H6K3 240 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 PPP1R12BO60237 982 aaPredicted RBP11.25□□□□□ -0.61
RIF1-202ENST00000414861 FMNL1O95466 1100 aaPredicted RBP11.25□□□□□ -0.61
RIF1-202ENST00000414861 KLRC3Q07444 240 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 ZNF543Q08ER8 600 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 KCTD1Q719H9 257 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 ZNF408Q9H9D4 720 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 CHMP5Q9NZZ3 219 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 CIZ1Q9ULV3 898 aaPredicted RBP11.25□□□□□ -0.61
RIF1-202ENST00000414861 STK36Q9NRP7 1315 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 KLRF2D3W0D1 207 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 NF2P35240 595 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 CCDC96Q2M329 555 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 FOXD4L5Q5VV16 416 aaPredicted RBP11.25□□□□□ -0.61
RIF1-202ENST00000414861 TTBK2Q6IQ55 1244 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 FAM184AQ8NB25 1140 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 CNKSR2Q8WXI2 1034 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 FOXD4L4Q8WXT5 416 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms