RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 TRIM75PA6NK02 468 aa23.76■■□□□ 1.39
USP39-203ENST00000409470 DDX4Q9NQI0 724 aaKnown RBP23.76■■□□□ 1.39
USP39-203ENST00000409470 PTPREP23469 700 aa23.76■■□□□ 1.39
USP39-203ENST00000409470 EARS2Q5JPH6 523 aaKnown RBP23.76■■□□□ 1.39
USP39-203ENST00000409470 FBXO2Q9UK22 296 aaPredicted RBP23.76■■□□□ 1.39
USP39-203ENST00000409470 A0A087WWV3 80 aa23.75■■□□□ 1.39
USP39-203ENST00000409470 GOLGA6L19H0YKK7 550 aa23.75■■□□□ 1.39
USP39-203ENST00000409470 ECE2O60344 883 aa23.75■■□□□ 1.39
USP39-203ENST00000409470 CDC42EP5Q6NZY7 148 aa23.75■■□□□ 1.39
USP39-203ENST00000409470 CEP95Q96GE4 821 aa23.75■■□□□ 1.39
USP39-203ENST00000409470 KCNH3Q9ULD8 1083 aa23.75■■□□□ 1.39
USP39-203ENST00000409470 VEGFAP15692 232 aaPredicted RBP23.74■■□□□ 1.39
USP39-203ENST00000409470 CRKP46108 304 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 NPY5RQ15761 445 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 STRIP1Q5VSL9 837 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 CEP57L1Q8IYX8 460 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 FAM13BQ9NYF5 915 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 TOP1P11387 765 aaKnown RBP23.74■■□□□ 1.39
USP39-203ENST00000409470 SPECC1Q5M775 1068 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 APOBEC3HQ6NTF7 200 aaKnown RBP23.74■■□□□ 1.39
USP39-203ENST00000409470 KIAA0825Q8IV33 1275 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 TNFRSF25Q93038 417 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 LZTS2Q9BRK4 669 aa23.74■■□□□ 1.39
USP39-203ENST00000409470 NAT10Q9H0A0 1025 aaKnown RBP23.74■■□□□ 1.39
USP39-203ENST00000409470 SRPRBQ9Y5M8 271 aaKnown RBP23.74■■□□□ 1.39
USP39-203ENST00000409470 PALM3A6NDB9 673 aaPredicted RBP23.73■■□□□ 1.39
USP39-203ENST00000409470 CALML3P27482 149 aa23.73■■□□□ 1.39
USP39-203ENST00000409470 ZKSCAN5Q9Y2L8 839 aa23.73■■□□□ 1.39
USP39-203ENST00000409470 BECN2A8MW95 431 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 GRIN1Q05586 938 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 GABPAQ06546 454 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 IQCB1Q15051 598 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 GPKOWQ92917 476 aaPredicted RBP eCLIP23.72■■□□□ 1.39
USP39-203ENST00000409470 OSBPL5Q9H0X9 879 aaPredicted RBP23.72■■□□□ 1.39
USP39-203ENST00000409470 SH3GLB2Q9NR46 395 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 ADAMTSL1Q8N6G6 1762 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 PARP1P09874 1014 aaKnown RBP23.72■■□□□ 1.39
USP39-203ENST00000409470 GOLGA8HP0CJ92 632 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 SF3B2Q13435 895 aaKnown RBP23.72■■□□□ 1.39
USP39-203ENST00000409470 AOC3Q16853 763 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 ZNF579Q8NAF0 562 aaKnown RBP23.72■■□□□ 1.39
USP39-203ENST00000409470 SERPINB13Q9UIV8 391 aa23.72■■□□□ 1.39
USP39-203ENST00000409470 KLRF2D3W0D1 207 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 BMP15O95972 392 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 RBM5P52756 815 aaKnown RBP eCLIP23.71■■□□□ 1.39
USP39-203ENST00000409470 FKBP1AP62942 108 aaKnown RBP23.71■■□□□ 1.39
USP39-203ENST00000409470 NOM1Q5C9Z4 860 aaKnown RBP23.71■■□□□ 1.39
USP39-203ENST00000409470 DACT2Q5SW24 774 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 C7orf43Q8WVR3 580 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 ZDHHC15Q96MV8 337 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 SWAP70Q9UH65 585 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 HLA-DOAP06340 250 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 TTC38Q5R3I4 469 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 PIK3AP1Q6ZUJ8 805 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 CNNM3Q8NE01 707 aa23.71■■□□□ 1.39
USP39-203ENST00000409470 BIN1O00499 593 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 CYTH3O43739 400 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 ZNF174Q15697 407 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 LONRF3Q496Y0 759 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 CC2D2BQ6DHV5 1058 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 KRBA2Q6ZNG9 492 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 TRIM5Q9C035 493 aa23.7■■□□□ 1.38
USP39-203ENST00000409470 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.7■■□□□ 1.38
USP39-203ENST00000409470 SLC35G1Q2M3R5 365 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 RASGRP2Q7LDG7 609 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 HEATR3Q7Z4Q2 680 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 BLIDQ8IZY5 108 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 MORC2Q9Y6X9 1032 aaPredicted RBP23.69■■□□□ 1.38
USP39-203ENST00000409470 PLIN4Q96Q06 1357 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 AKR1B1P15121 316 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 BAG6P46379 1132 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 NLRP12P59046 1061 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 NFIAQ12857 509 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 USP17L2Q6R6M4 530 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 SUPT20HQ8NEM7 779 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 MRIQ9BWK5 157 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 PDGFDQ9GZP0 370 aaPredicted RBP23.69■■□□□ 1.38
USP39-203ENST00000409470 CSRNP2Q9H175 543 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 MTMR4Q9NYA4 1195 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 PCDHA4Q9UN74 947 aa23.69■■□□□ 1.38
USP39-203ENST00000409470 NOVP48745 357 aa23.68■■□□□ 1.38
USP39-203ENST00000409470 KIAA2012Q0VF49 1180 aa23.68■■□□□ 1.38
USP39-203ENST00000409470 DPCR1Q3MIW9 517 aa23.68■■□□□ 1.38
USP39-203ENST00000409470 WWC2Q6AWC2 1192 aa23.68■■□□□ 1.38
USP39-203ENST00000409470 DHX40Q8IX18 779 aaKnown RBP23.68■■□□□ 1.38
USP39-203ENST00000409470 CCDC148Q8NFR7 591 aa23.68■■□□□ 1.38
USP39-203ENST00000409470 SPZ1Q9BXG8 430 aa23.68■■□□□ 1.38
USP39-203ENST00000409470 C21orf2O43822 256 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 TRAPPC10P48553 1259 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 HDLBPQ00341 1268 aaKnown RBP23.67■■□□□ 1.38
USP39-203ENST00000409470 PNOCQ13519 176 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 SPC24Q8NBT2 197 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 HOOK1Q9UJC3 728 aaKnown RBP23.67■■□□□ 1.38
USP39-203ENST00000409470 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.67■■□□□ 1.382e-8■■■□□ 16.1
USP39-203ENST00000409470 SCN9AQ15858 1988 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 GOLGA6L6A8MZA4 724 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 WNT7AO00755 349 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 POLR2DO15514 142 aaKnown RBP23.67■■□□□ 1.38
USP39-203ENST00000409470 AOPEPQ8N6M6 819 aa23.67■■□□□ 1.38
USP39-203ENST00000409470 FERMT2Q96AC1 680 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms