RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CORO1BQ9BR76 489 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 NRSN2Q9GZP1 204 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 PRKRIP1Q9H875 184 aaPredicted RBP6.87□□□□□ -1.31
CLK1-202ENST00000409403 PDE4DIPQ5VU43 2346 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 YBX3P16989 372 aaKnown RBP eCLIP6.87□□□□□ -1.31
CLK1-202ENST00000409403 GTF2F1P35269 517 aaKnown RBP eCLIP6.87□□□□□ -1.31
CLK1-202ENST00000409403 CRKP46108 304 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 RBM10P98175 930 aaKnown RBP6.87□□□□□ -1.31
CLK1-202ENST00000409403 COL9A2Q14055 689 aaPredicted RBP6.87□□□□□ -1.31
CLK1-202ENST00000409403 POU4F3Q15319 338 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 MAP1SQ66K74 1059 aaPredicted RBP6.87□□□□□ -1.31
CLK1-202ENST00000409403 WHAMMQ8TF30 809 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 KCNB2Q92953 911 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 KLHDC7BQ96G42 594 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 ORAI2Q96SN7 254 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 SIN3AQ96ST3 1273 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 LRRC3Q9BY71 257 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 ENAMQ9NRM1 1142 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 ISY1Q9ULR0 285 aaKnown RBP6.87□□□□□ -1.31
CLK1-202ENST00000409403 EFR3BQ9Y2G0 817 aa6.87□□□□□ -1.31
CLK1-202ENST00000409403 USP19O94966 1318 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 SBF2Q86WG5 1849 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 FAM221AA4D161 298 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 FAM9BQ8IZU0 186 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 DTWD1Q8N5C7 304 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 NKD1Q969G9 470 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 RRAGCQ9HB90 399 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 GINM1Q9NU53 330 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 ADGRL2O95490 1459 aa6.86□□□□□ -1.31
CLK1-202ENST00000409403 CILPO75339 1184 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 BPNT1O95861 308 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 MAOBP27338 520 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 SOX9P48436 509 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 NASPP49321 788 aaPredicted RBP6.85□□□□□ -1.31
CLK1-202ENST00000409403 MPP2Q14168 576 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 SUZ12Q15022 739 aaKnown RBP6.85□□□□□ -1.31
CLK1-202ENST00000409403 SEZ6Q53EL9 994 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 MTERF4Q7Z6M4 381 aaKnown RBP6.85□□□□□ -1.31
CLK1-202ENST00000409403 SLITRK4Q8IW52 837 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 GALNT11Q8NCW6 608 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 NEDD1Q8NHV4 660 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 DCAF11Q8TEB1 546 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 DHX38Q92620 1227 aaKnown RBP6.85□□□□□ -1.31
CLK1-202ENST00000409403 ZC3H12CQ9C0D7 883 aaKnown RBP6.85□□□□□ -1.31
CLK1-202ENST00000409403 RRAGDQ9NQL2 400 aaPredicted RBP6.85□□□□□ -1.31
CLK1-202ENST00000409403 KRT82Q9NSB4 513 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 TOPAZ1Q8N9V7 1692 aa6.85□□□□□ -1.31
CLK1-202ENST00000409403 RIMS2Q9UQ26 1411 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 TM4SF5O14894 197 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 TLR3O15455 904 aaKnown RBP6.84□□□□□ -1.31
CLK1-202ENST00000409403 HOXB4P17483 251 aaPredicted RBP6.84□□□□□ -1.31
CLK1-202ENST00000409403 CWF19L2Q2TBE0 894 aaKnown RBP6.84□□□□□ -1.31
CLK1-202ENST00000409403 ZNF385CQ66K41 422 aaPredicted RBP6.84□□□□□ -1.31
CLK1-202ENST00000409403 MPRIPQ6WCQ1 1025 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 SVOPQ8N4V2 548 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 FBXO27Q8NI29 283 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 USP26Q9BXU7 913 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 CACNA2D2Q9NY47 1150 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 STRIP2Q9ULQ0 834 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 ZNF644Q9H582 1327 aaPredicted RBP6.84□□□□□ -1.31
CLK1-202ENST00000409403 NRXN3Q9Y4C0 1643 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 ARHGAP31Q2M1Z3 1444 aa6.84□□□□□ -1.31
CLK1-202ENST00000409403 ECEL1O95672 775 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 SSBP05455 408 aaKnown RBP eCLIP6.84□□□□□ -1.32
CLK1-202ENST00000409403 CD68P34810 354 aaPredicted RBP6.84□□□□□ -1.32
CLK1-202ENST00000409403 RRP1P56182 461 aaKnown RBP6.84□□□□□ -1.32
CLK1-202ENST00000409403 NLRP12P59046 1061 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 PTPN11Q06124 597 aaPredicted RBP6.84□□□□□ -1.32
CLK1-202ENST00000409403 IDI1Q13907 227 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 TRAPPC3LQ5T215 181 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 REC114Q7Z4M0 266 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 GPBAR1Q8TDU6 330 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 ACSBG1Q96GR2 724 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 TBX22Q9Y458 520 aa6.84□□□□□ -1.32
CLK1-202ENST00000409403 CCDC7Q96M83 1385 aa6.83□□□□□ -1.32
CLK1-202ENST00000409403 COL24A1Q17RW2 1714 aa6.83□□□□□ -1.32
CLK1-202ENST00000409403 DEAF1O75398 565 aaPredicted RBP6.83□□□□□ -1.32
CLK1-202ENST00000409403 TERF1P54274 439 aa6.83□□□□□ -1.32
CLK1-202ENST00000409403 RPL6Q02878 288 aaKnown RBP6.83□□□□□ -1.32
CLK1-202ENST00000409403 PDE3AQ14432 1141 aa6.83□□□□□ -1.32
CLK1-202ENST00000409403 HP1BP3Q5SSJ5 553 aaPredicted RBP6.83□□□□□ -1.32
CLK1-202ENST00000409403 NLGN2Q8NFZ4 835 aa6.83□□□□□ -1.32
CLK1-202ENST00000409403 DNAJC2Q99543 621 aaKnown RBP6.83□□□□□ -1.32
CLK1-202ENST00000409403 CCDC86Q9H6F5 360 aaKnown RBP6.83□□□□□ -1.32
CLK1-202ENST00000409403 PIK3R4Q99570 1358 aa6.83□□□□□ -1.32
CLK1-202ENST00000409403 CCDC141Q6ZP82 1450 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 LMTK2Q8IWU2 1503 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 ARHGEF5Q12774 1597 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 LOC100289279A0A1B0GTE1 492 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 GOLGA6L3A6NEY3 463 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 STK10O94804 968 aaKnown RBP6.82□□□□□ -1.32
CLK1-202ENST00000409403 BECN1Q14457 450 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 FOXD4L6Q3SYB3 417 aaPredicted RBP6.82□□□□□ -1.32
CLK1-202ENST00000409403 FOXD4L3Q6VB84 417 aaPredicted RBP6.82□□□□□ -1.32
CLK1-202ENST00000409403 ABHD8Q96I13 439 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 HIRIP3Q9BW71 556 aaPredicted RBP6.82□□□□□ -1.32
CLK1-202ENST00000409403 PCDHA4Q9UN74 947 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 CCDC18Q5T9S5 1454 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 TULP4Q9NRJ4 1543 aa6.82□□□□□ -1.32
CLK1-202ENST00000409403 DDX3YO15523 660 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms