RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 PLEKHH3Q7Z736 793 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 SOCS4Q8WXH5 440 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 USP6NLQ92738 828 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 TANGO6Q9C0B7 1094 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 ARHGEF10LQ9HCE6 1279 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 MINDY4BA8MYZ0 360 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 MORN1Q5T089 497 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 FSD1Q9BTV5 496 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 GREB1LQ9C091 1923 aaPredicted RBP23.1■■□□□ 1.29
SMARCB1-204ENST00000407422 PARP14Q460N5 1801 aa23.1■■□□□ 1.29
SMARCB1-204ENST00000407422 EEF2P13639 858 aaKnown RBP23.1■■□□□ 1.29
SMARCB1-204ENST00000407422 COG2Q14746 738 aa23.1■■□□□ 1.29
SMARCB1-204ENST00000407422 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.1■■□□□ 1.29
SMARCB1-204ENST00000407422 TFRCP02786 760 aaKnown RBP23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 XRCC5P13010 732 aaKnown RBP23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 CCNA1P78396 465 aa23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 ATP2B2Q01814 1243 aa23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 WDR78Q5VTH9 848 aa23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 LPAR1Q92633 364 aa23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 GCC1Q96CN9 775 aa23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 VCPKMTQ9H867 229 aa23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 ZBTB47Q9UFB7 747 aaPredicted RBP23.09■■□□□ 1.29
SMARCB1-204ENST00000407422 FARP2O94887 1054 aaPredicted RBP23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 APPP05067 770 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 GNAT2P19087 354 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 CCL14Q16627 93 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 LRRFIP1Q32MZ4 808 aaKnown RBP23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 CRISPLD2Q9H0B8 497 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 SH2D4AQ9H788 454 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 KANSL2Q9H9L4 492 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 CWC22Q9HCG8 908 aaKnown RBP23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 HOXC10Q9NYD6 342 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 A0A0G2JMZ2 1700 aa23.08■■□□□ 1.29
SMARCB1-204ENST00000407422 ROBO3Q96MS0 1386 aa23.08■■□□□ 1.28
SMARCB1-204ENST00000407422 RASA1P20936 1047 aa23.08■■□□□ 1.28
SMARCB1-204ENST00000407422 RGS2P41220 211 aa23.08■■□□□ 1.28
SMARCB1-204ENST00000407422 TDO2P48775 406 aa23.08■■□□□ 1.28
SMARCB1-204ENST00000407422 RANBP2P49792 3224 aaKnown RBP23.08■■□□□ 1.28
SMARCB1-204ENST00000407422 RPTORQ8N122 1335 aa23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 PATL2C9JE40 543 aaKnown RBP23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 FLOT1O75955 427 aa23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 ZMYM1Q5SVZ6 1142 aa23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 IFNL3Q8IZI9 196 aa23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 MKNK2Q9HBH9 465 aa23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 HMX1Q9NP08 348 aaPredicted RBP23.07■■□□□ 1.28
SMARCB1-204ENST00000407422 PRKAR2AP13861 404 aaKnown RBP23.06■■□□□ 1.28
SMARCB1-204ENST00000407422 ZKSCAN1P17029 563 aaPredicted RBP23.06■■□□□ 1.28
SMARCB1-204ENST00000407422 DSG3P32926 999 aa23.06■■□□□ 1.28
SMARCB1-204ENST00000407422 MAP2K5Q13163 448 aa23.06■■□□□ 1.28
SMARCB1-204ENST00000407422 MAP3K21Q5TCX8 1036 aa23.06■■□□□ 1.28
SMARCB1-204ENST00000407422 STAP2Q9UGK3 403 aa23.06■■□□□ 1.28
SMARCB1-204ENST00000407422 PTPREP23469 700 aa23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 PDE1AP54750 535 aa23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 SAMD1Q6SPF0 538 aaPredicted RBP23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 DPF3Q92784 378 aa23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 ATG4CQ96DT6 458 aa23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 APBA2Q99767 749 aa23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 MOV10L1Q9BXT6 1211 aaKnown RBP23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 COL11A1P12107 1806 aaPredicted RBP23.05■■□□□ 1.28
SMARCB1-204ENST00000407422 H0YGN5 161 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 PRDM1O75626 825 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 MYH4Q9Y623 1939 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 SLC15A5A6NIM6 579 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 WDR46O15213 610 aaKnown RBP23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 SLC34A2O95436 690 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 CACNB2Q08289 660 aaPredicted RBP23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 CCDC129Q6ZRS4 1044 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 TRMT44Q8IYL2 757 aaKnown RBP23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 SPATC1LQ9H0A9 340 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 FLRT1Q9NZU1 646 aa23.04■■□□□ 1.28
SMARCB1-204ENST00000407422 RAD21O60216 631 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 GRB14Q14449 540 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 EXOC6Q8TAG9 804 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 DIS3LQ8TF46 1054 aaKnown RBP23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 LNPKQ9C0E8 428 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 FBXO28Q9NVF7 368 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 IVNS1ABPQ9Y6Y0 642 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 DNAH12Q6ZR08 3092 aa23.03■■□□□ 1.28
SMARCB1-204ENST00000407422 AAMPQ13685 434 aa23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 PLS1Q14651 629 aa23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 MB21D1Q8N884 522 aa23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 PAWRQ96IZ0 340 aaKnown RBP23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 HTATIP2Q9BUP3 242 aa23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 NACAP1Q9BZK3 213 aa23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 GOPCQ9HD26 462 aa23.02■■□□□ 1.28
SMARCB1-204ENST00000407422 FOXP2O15409 715 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 IGHDP01880 384 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 ERCC3P19447 782 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 FAM83BQ5T0W9 1011 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 B4GALNT3Q6L9W6 998 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 EVI5LQ96CN4 794 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 ALPK3Q96L96 1907 aa23.01■■□□□ 1.27
SMARCB1-204ENST00000407422 CCND3P30281 292 aaPredicted RBP23■■□□□ 1.27
SMARCB1-204ENST00000407422 SMC5Q8IY18 1101 aa23■■□□□ 1.27
SMARCB1-204ENST00000407422 ZNF444Q8N0Y2 327 aaPredicted RBP23■■□□□ 1.27
SMARCB1-204ENST00000407422 NPLOC4Q8TAT6 608 aa23■■□□□ 1.27
SMARCB1-204ENST00000407422 NAPBQ9H115 298 aa23■■□□□ 1.27
SMARCB1-204ENST00000407422 ZNFX1Q9P2E3 1918 aaKnown RBP23■■□□□ 1.27
SMARCB1-204ENST00000407422 IGKV6D-41A0A0C4DH26 115 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms