RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 MYH8P13535 1937 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 SOS2Q07890 1332 aaPredicted RBP23.75■■□□□ 1.39
CTCF-202ENST00000401394 MAP3K15Q6ZN16 1313 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 ERICH2A1L162 156 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 PP2D1A8MPX8 630 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 GPS2Q13227 327 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 MTMR7Q9Y216 660 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 DUSP10Q9Y6W6 482 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 STK36Q9NRP7 1315 aa23.75■■□□□ 1.39
CTCF-202ENST00000401394 ZNF185O15231 689 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 KLK7P49862 253 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 RASGRP4Q8TDF6 673 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 LAMB4A4D0S4 1761 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 BRD3Q15059 726 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 PIK3AP1Q6ZUJ8 805 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 PLA2G12BQ9BX93 195 aa23.74■■□□□ 1.39
CTCF-202ENST00000401394 PPARAQ07869 468 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 KCTD19Q17RG1 926 aaPredicted RBP23.73■■□□□ 1.39
CTCF-202ENST00000401394 ENAHQ8N8S7 591 aaPredicted RBP23.73■■□□□ 1.39
CTCF-202ENST00000401394 IL2RBP14784 551 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 ERCC3P19447 782 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 PUM3Q15397 648 aaKnown RBP23.73■■□□□ 1.39
CTCF-202ENST00000401394 HDXQ7Z353 690 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 SH3RF1Q7Z6J0 888 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 WASF1Q92558 559 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 ABCC12Q96J65 1359 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 COL18A1P39060 1754 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 FAM193AP78312 1265 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 MMS19Q96T76 1030 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 NAPGQ99747 312 aaPredicted RBP23.73■■□□□ 1.39
CTCF-202ENST00000401394 KRT23Q9C075 422 aa23.73■■□□□ 1.39
CTCF-202ENST00000401394 SPEF2Q9C093 1822 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 CTAGE15A4D2H0 777 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 ATP1A1P05023 1023 aaKnown RBP23.72■■□□□ 1.39
CTCF-202ENST00000401394 CTAGE8P0CG41 777 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 TRIM28Q13263 835 aaKnown RBP23.72■■□□□ 1.39
CTCF-202ENST00000401394 NPY5RQ15761 445 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 CTAGE6Q86UF2 777 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 TICAM2Q86XR7 235 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 CTAGE4Q8IX94 777 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 LPIN2Q92539 896 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 MYH7P12883 1935 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 FGFR2P21802 821 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 CYP7A1P22680 504 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 ACTN2P35609 894 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 ZNF579Q8NAF0 562 aaKnown RBP23.72■■□□□ 1.39
CTCF-202ENST00000401394 EXOC4Q96A65 974 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 AK7Q96M32 723 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 AATFQ9NY61 560 aaKnown RBP eCLIP23.72■■□□□ 1.39
CTCF-202ENST00000401394 JAG2Q9Y219 1238 aa23.72■■□□□ 1.39
CTCF-202ENST00000401394 RRP15Q9Y3B9 282 aaKnown RBP23.72■■□□□ 1.39
CTCF-202ENST00000401394 MYO1BO43795 1136 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 MYBL2P10244 700 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 UBXN1Q04323 297 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 FAM47AQ5JRC9 791 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 TRIML1Q8N9V2 468 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 STAG1Q8WVM7 1258 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 RAB21Q9UL25 225 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 WDR17Q8IZU2 1322 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 TTC26A0AVF1 554 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 RCCD1A6NED2 376 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 COPB1P53618 953 aaKnown RBP23.71■■□□□ 1.39
CTCF-202ENST00000401394 SART3Q15020 963 aaKnown RBP23.71■■□□□ 1.39
CTCF-202ENST00000401394 MUM1L1Q5H9M0 696 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 CEP112Q8N8E3 955 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 MSANTD4Q8NCY6 345 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 NELFBQ8WX92 580 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 LMTK3Q96Q04 1460 aa23.71■■□□□ 1.39
CTCF-202ENST00000401394 POLD4Q9HCU8 107 aa23.7■■□□□ 1.39
CTCF-202ENST00000401394 MST1RQ04912 1400 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 KRT2P35908 639 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 TNNT3P45378 269 aaPredicted RBP23.7■■□□□ 1.38
CTCF-202ENST00000401394 SEC23AQ15436 765 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 FBXO3Q9UK99 471 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 MYO6Q9UM54 1294 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 PRCPP42785 496 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 GYG1P46976 350 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 FUT2Q10981 343 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 ALX1Q15699 326 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 FILIP1LQ4L180 1135 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 PHF20Q9BVI0 1012 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 FAM204AQ9H8W3 233 aa23.7■■□□□ 1.38
CTCF-202ENST00000401394 ATRNO75882 1429 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 KCNJ18B7U540 433 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 PPARDQ03181 441 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 KCNJ12Q14500 433 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 SRLQ86TD4 932 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 EHD4Q9H223 541 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 CYP27A1Q02318 531 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 TTC38Q5R3I4 469 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 IRF2BP1Q8IU81 584 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 GOLGA5Q8TBA6 731 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 SMCR8Q8TEV9 937 aaPredicted RBP23.69■■□□□ 1.38
CTCF-202ENST00000401394 CNNM2Q9H8M5 875 aa23.69■■□□□ 1.38
CTCF-202ENST00000401394 AMPD2Q01433 879 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 ALS2Q96Q42 1657 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 SUSD4Q5VX71 490 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 TNS3Q68CZ2 1445 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 PSMB7Q99436 277 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 LACRTQ9GZZ8 138 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms