RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 LOC102724428A0A0B4J2F2 783 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 ERCC5P28715 1186 aaPredicted RBP23.42■■□□□ 1.34
CLK3-202ENST00000395066 CDC25AP30304 524 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 SIK1P57059 783 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 ERFEQ4G0M1 354 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 BICDL1Q6ZP65 573 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 GPR161Q8N6U8 529 aaKnown RBP23.42■■□□□ 1.34
CLK3-202ENST00000395066 PPP1R3GB7ZBB8 358 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 PRPF3O43395 683 aaKnown RBP23.41■■□□□ 1.34
CLK3-202ENST00000395066 TBC1D8O95759 1140 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 TFRCP02786 760 aaKnown RBP23.41■■□□□ 1.34
CLK3-202ENST00000395066 TTC38Q5R3I4 469 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 SPATA1Q5VX52 437 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 CC2D1AQ6P1N0 951 aaPredicted RBP23.41■■□□□ 1.34
CLK3-202ENST00000395066 CTR9Q6PD62 1173 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 SH3RF1Q7Z6J0 888 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 SRBD1Q8N5C6 995 aaKnown RBP23.41■■□□□ 1.34
CLK3-202ENST00000395066 UBXN6Q9BZV1 441 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 ANAPC4Q9UJX5 808 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 MYH14Q7Z406 1995 aaKnown RBP23.41■■□□□ 1.34
CLK3-202ENST00000395066 CYP2D6P10635 497 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 HNRNPH2P55795 449 aaKnown RBP23.41■■□□□ 1.34
CLK3-202ENST00000395066 PIK3AP1Q6ZUJ8 805 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 MAPK8IP1Q9UQF2 711 aa23.41■■□□□ 1.34
CLK3-202ENST00000395066 XDHP47989 1333 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 SASH3O75995 380 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 CASP14P31944 242 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 ADD3Q9UEY8 706 aaKnown RBP23.4■■□□□ 1.34
CLK3-202ENST00000395066 DUOX1Q9NRD9 1551 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 ZNF804BA4D1E1 1349 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 ABL1P00519 1130 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 MCM7P33993 719 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 PARP10Q53GL7 1025 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 PHLPP1O60346 1717 aa23.4■■□□□ 1.34
CLK3-202ENST00000395066 RCAN1P53805 252 aa23.39■■□□□ 1.34
CLK3-202ENST00000395066 IQCA1Q86XH1 822 aa23.39■■□□□ 1.34
CLK3-202ENST00000395066 TNFRSF25Q93038 417 aa23.39■■□□□ 1.34
CLK3-202ENST00000395066 CACNA1SQ13698 1873 aa23.39■■□□□ 1.33
CLK3-202ENST00000395066 FXR1P51114 621 aaKnown RBP eCLIP23.39■■□□□ 1.33
CLK3-202ENST00000395066 IL17AQ16552 155 aa23.39■■□□□ 1.33
CLK3-202ENST00000395066 PPFIBP1Q86W92 1011 aa23.39■■□□□ 1.33
CLK3-202ENST00000395066 MTRQ99707 1265 aa23.39■■□□□ 1.33
CLK3-202ENST00000395066 MTA3Q9BTC8 594 aa23.39■■□□□ 1.33
CLK3-202ENST00000395066 CNTNAP5Q8WYK1 1306 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 CCDC175P0C221 793 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 TMTC3Q6ZXV5 915 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 RSRC2Q7L4I2 434 aaKnown RBP23.38■■□□□ 1.33
CLK3-202ENST00000395066 CCDC24Q8N4L8 307 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 CCDC34Q96HJ3 373 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 ADGRG1Q9Y653 693 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 CDKAL1Q5VV42 579 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 ANKRD18AQ8IVF6 992 aa23.38■■□□□ 1.33
CLK3-202ENST00000395066 CELF1Q92879 486 aaKnown RBP23.38■■□□□ 1.33
CLK3-202ENST00000395066 FAM84BQ96KN1 310 aaPredicted RBP23.38■■□□□ 1.33
CLK3-202ENST00000395066 RNF225M0QZC1 329 aaPredicted RBP23.37■■□□□ 1.33
CLK3-202ENST00000395066 OAS2P29728 719 aaKnown RBP23.37■■□□□ 1.33
CLK3-202ENST00000395066 CDC5LQ99459 802 aaKnown RBP23.37■■□□□ 1.33
CLK3-202ENST00000395066 TFCP2L1Q9NZI6 479 aa23.37■■□□□ 1.33
CLK3-202ENST00000395066 MYH13Q9UKX3 1938 aa23.37■■□□□ 1.33
CLK3-202ENST00000395066 GYPCP04921 128 aa23.37■■□□□ 1.33
CLK3-202ENST00000395066 ACRBPQ8NEB7 543 aa23.37■■□□□ 1.33
CLK3-202ENST00000395066 VPS16Q9H269 839 aa23.37■■□□□ 1.33
CLK3-202ENST00000395066 PUF60Q9UHX1 559 aaKnown RBP23.37■■□□□ 1.33
CLK3-202ENST00000395066 TULP2O00295 520 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 PBX1P40424 430 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 SMC1AQ14683 1233 aaKnown RBP23.36■■□□□ 1.33
CLK3-202ENST00000395066 BBXQ8WY36 941 aaPredicted RBP23.36■■□□□ 1.33
CLK3-202ENST00000395066 FERMT2Q96AC1 680 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 ARFGAP3Q9NP61 516 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 ZCCHC17Q9NP64 241 aaKnown RBP23.36■■□□□ 1.33
CLK3-202ENST00000395066 GNL3LQ9NVN8 582 aaKnown RBP23.36■■□□□ 1.33
CLK3-202ENST00000395066 NLRP5P59047 1200 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 RRAGBQ5VZM2 374 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 NEK11Q8NG66 645 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 RASGRP4Q8TDF6 673 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 RABGGTAQ92696 567 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 PANX2Q96RD6 677 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 PARD6BQ9BYG5 372 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 MINPP1Q9UNW1 487 aa23.36■■□□□ 1.33
CLK3-202ENST00000395066 MFAP3LO75121 409 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 ATP2C1P98194 919 aaPredicted RBP23.35■■□□□ 1.33
CLK3-202ENST00000395066 TXLNBQ8N3L3 684 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 BRMS1Q9HCU9 246 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 KCNQ2O43526 872 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 ADAMTS2O95450 1211 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 ST5P78524 1137 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 CAVIN4Q5BKX8 364 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 GPKOWQ92917 476 aaPredicted RBP eCLIP23.35■■□□□ 1.33
CLK3-202ENST00000395066 GSDMAQ96QA5 445 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 TAB2Q9NYJ8 693 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 MTMR7Q9Y216 660 aa23.35■■□□□ 1.33
CLK3-202ENST00000395066 GTF2E1P29083 439 aaPredicted RBP23.34■■□□□ 1.33
CLK3-202ENST00000395066 PRDX5P30044 214 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 MECOMQ03112 1051 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 KRT31Q15323 416 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 E2F4Q16254 413 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 DDB1Q16531 1140 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 SLC51AQ86UW1 340 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 GOLGA1Q92805 767 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 BRIP1Q9BX63 1249 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms