RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CHRNA5P30532 468 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 ALDH1B1P30837 517 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 PFKFB3Q16875 520 aaPredicted RBP17.3■□□□□ 0.36
GPC3-202ENST00000394299 PIK3AP1Q6ZUJ8 805 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 C16orf86Q6ZW13 317 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 CCDC186Q7Z3E2 898 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 GRAMD1CQ8IYS0 662 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 CEP57L1Q8IYX8 460 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 RASGRP4Q8TDF6 673 aa17.3■□□□□ 0.36
GPC3-202ENST00000394299 NAP1L5Q96NT1 182 aaPredicted RBP17.3■□□□□ 0.36
GPC3-202ENST00000394299 POLR2DO15514 142 aaKnown RBP17.29■□□□□ 0.36
GPC3-202ENST00000394299 KRBA2Q6ZNG9 492 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 TMC4Q7Z404 712 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 C2CD5Q86YS7 1000 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 CNNM3Q8NE01 707 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 ANKS1AQ92625 1134 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 TRIM75PA6NK02 468 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 G3V3G9 751 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 CAVIN2O95810 425 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 KIF5BP33176 963 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 ZRSR1Q15695 479 aaKnown RBP17.29■□□□□ 0.36
GPC3-202ENST00000394299 DCAF8Q5TAQ9 597 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 CLEC10AQ8IUN9 316 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 EPSTI1Q96J88 318 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 TIGD1Q96MW7 591 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 SERTAD1Q9UHV2 236 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 PYCARDQ9ULZ3 195 aa17.29■□□□□ 0.36
GPC3-202ENST00000394299 NLRP12P59046 1061 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 GRM4Q14833 912 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 EZH2Q15910 746 aaKnown RBP17.28■□□□□ 0.36
GPC3-202ENST00000394299 TCP11L1Q9NUJ3 509 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 SRPRBQ9Y5M8 271 aaKnown RBP17.28■□□□□ 0.36
GPC3-202ENST00000394299 LTBP1Q14766 1721 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 PLCG2P16885 1265 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 EN1Q05925 392 aaPredicted RBP17.28■□□□□ 0.36
GPC3-202ENST00000394299 LRMPQ12912 555 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 CCDC144BQ3MJ40 725 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 USP17L2Q6R6M4 530 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 SLF2Q8IX21 1173 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 CEP95Q96GE4 821 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 PDGFDQ9GZP0 370 aaPredicted RBP17.28■□□□□ 0.36
GPC3-202ENST00000394299 USP40Q9NVE5 1235 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 PCDHA5Q9Y5H7 936 aa17.28■□□□□ 0.36
GPC3-202ENST00000394299 SNED1Q8TER0 1413 aa17.27■□□□□ 0.36
GPC3-202ENST00000394299 A0A087X0B3 334 aa17.27■□□□□ 0.36
GPC3-202ENST00000394299 IGSF3O75054 1194 aa17.27■□□□□ 0.36
GPC3-202ENST00000394299 PRR29P0C7W0 189 aa17.27■□□□□ 0.36
GPC3-202ENST00000394299 EIF6P56537 245 aaKnown RBP17.27■□□□□ 0.36
GPC3-202ENST00000394299 OFD1O75665 1012 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 MDM2Q00987 491 aaPredicted RBP17.26■□□□□ 0.35
GPC3-202ENST00000394299 NEDD1Q8NHV4 660 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 CLIP2Q9UDT6 1046 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 TUBE1Q9UJT0 475 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 NAV1Q8NEY1 1877 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 CDK5RAP2Q96SN8 1893 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 CACNB3P54284 484 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 ARID5BQ14865 1188 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 TTC38Q5R3I4 469 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 ZFPM1Q8IX07 1006 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 FLAD1Q8NFF5 587 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 VAT1LQ9HCJ6 419 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 BRMS1Q9HCU9 246 aa17.26■□□□□ 0.35
GPC3-202ENST00000394299 RGS17Q9UGC6 210 aaPredicted RBP17.26■□□□□ 0.35
GPC3-202ENST00000394299 PALM3A6NDB9 673 aaPredicted RBP17.25■□□□□ 0.35
GPC3-202ENST00000394299 BMP6P22004 513 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 KIAA2012Q0VF49 1180 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 NFIAQ12857 509 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 PTGDRQ13258 359 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 NAT10Q9H0A0 1025 aaKnown RBP17.25■□□□□ 0.35
GPC3-202ENST00000394299 FAM13BQ9NYF5 915 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 CEP131Q9UPN4 1083 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 LRRC37AA6NMS7 1700 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 KLRF2D3W0D1 207 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 MCM7P33993 719 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 NCAPHQ15003 741 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 WWC2Q6AWC2 1192 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 CDC42EP5Q6NZY7 148 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 HEATR3Q7Z4Q2 680 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 KIAA0825Q8IV33 1275 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 UBA5Q9GZZ9 404 aa17.25■□□□□ 0.35
GPC3-202ENST00000394299 DDX60LQ5H9U9 1706 aaKnown RBP17.24■□□□□ 0.35
GPC3-202ENST00000394299 AKR1B1P15121 316 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 CASP1P29466 404 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 APOBEC3HQ6NTF7 200 aaKnown RBP17.24■□□□□ 0.35
GPC3-202ENST00000394299 POTEAQ6S8J7 498 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 HOMER1Q86YM7 354 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 TMX4Q9H1E5 349 aaPredicted RBP17.24■□□□□ 0.35
GPC3-202ENST00000394299 COL11A2P13942 1736 aaPredicted RBP17.24■□□□□ 0.35
GPC3-202ENST00000394299 VWA3AA6NCI4 1184 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 USP17L5A8MUK1 530 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 H0YIN7 160 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 SARM1Q6SZW1 724 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 CERS3Q8IU89 383 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 DHX58Q96C10 678 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 ZNF287Q9HBT7 754 aa17.24■□□□□ 0.35
GPC3-202ENST00000394299 NOLC1Q14978 699 aaKnown RBP eCLIP17.23■□□□□ 0.351e-32■■□□□ 12.1
GPC3-202ENST00000394299 IL17AQ16552 155 aa17.23■□□□□ 0.35
GPC3-202ENST00000394299 BLIDQ8IZY5 108 aa17.23■□□□□ 0.35
GPC3-202ENST00000394299 ZNF579Q8NAF0 562 aaKnown RBP17.23■□□□□ 0.35
GPC3-202ENST00000394299 SYMPKQ92797 1274 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms