RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EPN1Q9Y6I3 576 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 SCINQ9Y6U3 715 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 ARHGAP44Q17R89 818 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 TADA2BQ86TJ2 420 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 KAT6BQ8WYB5 2073 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PHLPP2Q6ZVD8 1323 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 BCRP11274 1271 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 ARHGAP4P98171 946 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PPP2R5EQ16537 467 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 HERC4Q5GLZ8 1057 aaPredicted RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PDCD7Q8N8D1 485 aaKnown RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 YIPF3Q9GZM5 350 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 KRT40Q6A162 431 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 SYNJ1O43426 1573 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 SART1O43290 800 aaKnown RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 IFNB1P01574 187 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PNMA6AP0CW24 399 aaPredicted RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 IL9RQ01113 521 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PIP4K2CQ8TBX8 421 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 ATICP31939 592 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 GOLGA8FQ08AF8 430 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 GOLGA8DPQ0D2H9 430 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 LOC102724159A0A0B4J2E5 919 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PARP1P09874 1014 aaKnown RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 PWP2Q15269 919 aaKnown RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 CACTINQ8WUQ7 758 aaKnown RBP13.04□□□□□ -0.32
SYNPO-202ENST00000394243 IQCDQ96DY2 449 aa13.04□□□□□ -0.32
SYNPO-202ENST00000394243 EIF3CLB5ME19 914 aaKnown RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 CREB3O43889 395 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 CTNND1O60716 968 aaKnown RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 PROCA1Q8NCQ7 364 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 RSAD2Q8WXG1 361 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 EIF3CQ99613 913 aaKnown RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 CENPKQ9BS16 269 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 ZC4H2Q9NQZ6 224 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 KCNJ14Q9UNX9 436 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 F8W031 263 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 EPHB4P54760 987 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 IFNL2Q8IZJ0 200 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 RIC8AQ9NPQ8 531 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 RANBP1P43487 201 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 ANKLE2Q86XL3 938 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 TEX13AQ9BXU3 409 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 EPB41L5Q9HCM4 733 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 PDCD2Q16342 344 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 BSPRYQ5W0U4 402 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 GABPB2Q8TAK5 448 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 CCDC151A5D8V7 595 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 NNTQ13423 1086 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 ANKRD20A4Q4UJ75 823 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 ANKRD20A8PQ5CZ79 823 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 ANKRD20A2Q5SQ80 823 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 ANKRD20A1Q5TYW2 823 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 NAA35Q5VZE5 725 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 MPHOSPH6Q99547 160 aaKnown RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 CD2APQ9Y5K6 639 aa13.03□□□□□ -0.32
SYNPO-202ENST00000394243 AQRO60306 1485 aaKnown RBP eCLIP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 TYW1Q9NV66 732 aaKnown RBP13.03□□□□□ -0.32
SYNPO-202ENST00000394243 CHMP2AO43633 222 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 MBD4O95243 580 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 GRK7Q8WTQ7 553 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 MYL10Q9BUA6 226 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 LINS1Q8NG48 757 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 PKD2L1Q9P0L9 805 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 INTUQ9ULD6 942 aa13.02□□□□□ -0.32
SYNPO-202ENST00000394243 ABCC5O15440 1437 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 RBM6P78332 1123 aaKnown RBP13.02□□□□□ -0.33
SYNPO-202ENST00000394243 C2orf54Q08AI8 447 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 CEP70Q8NHQ1 597 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 LRGUKQ96M69 825 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 CHUKO15111 745 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 DNM2P50570 870 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 SP4Q02446 784 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 TTLL12Q14166 644 aaPredicted RBP13.02□□□□□ -0.33
SYNPO-202ENST00000394243 ZNF827Q17R98 1081 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 MMEL1Q495T6 779 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 PRXQ9BXM0 1461 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 POC1B-GALNT4F8VUJ3 575 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 SLC12A2P55011 1212 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 CASP8Q14790 479 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 SDCCAG3Q96C92 435 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 USP28Q96RU2 1077 aa13.02□□□□□ -0.33
SYNPO-202ENST00000394243 NOP53Q9NZM5 478 aaKnown RBP13.02□□□□□ -0.33
SYNPO-202ENST00000394243 GCNT3O95395 438 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 KRT3P12035 628 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 RSPH3Q86UC2 560 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 SNX29Q8TEQ0 813 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 NAP1L4Q99733 375 aaKnown RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 HAUS8Q9BT25 410 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 EHHADHQ08426 723 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 ADCY1Q08828 1119 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 HELBQ8NG08 1087 aaPredicted RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 IFT122Q9HBG6 1241 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 STAT1P42224 750 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 SLC39A6Q13433 755 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 MAEAQ7L5Y9 396 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 TXLNGQ9NUQ3 528 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 MTMR6Q9Y217 621 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 CDK13Q14004 1512 aaKnown RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 BRD2P25440 801 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms