RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 DALRD3Q5D0E6 543 aaKnown RBP12.67□□□□□ -0.38
CUX1-204ENST00000393824 TMEM139Q8IV31 216 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 PPM1EQ8WY54 764 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 APPBP2Q92624 585 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 NSUN4Q96CB9 384 aaKnown RBP12.67□□□□□ -0.38
CUX1-204ENST00000393824 EIF3CQ99613 913 aaKnown RBP12.67□□□□□ -0.38
CUX1-204ENST00000393824 HSD3B7Q9H2F3 369 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 DOCK2Q92608 1830 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 NFKBIEO00221 500 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 GPAA1O43292 621 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 CORO7P57737 925 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 BEND6Q5SZJ8 279 aaPredicted RBP12.67□□□□□ -0.38
CUX1-204ENST00000393824 TTLL5Q6EMB2 1281 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 FBXL16Q8N461 479 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 CNKSR2Q8WXI2 1034 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 KIFC2Q96AC6 838 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 WDR24Q96S15 920 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 RTEL1Q9NZ71 1219 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 SMIM22K7EJ46 135 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 SEMA3EO15041 775 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 PRKAB2O43741 272 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 CYP21A2P08686 494 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 HSPD1P10809 573 aaKnown RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 ATP2B1P20020 1258 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 NDUFA8P51970 172 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 GNG11P61952 73 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 MAP3K12Q12852 859 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 UBE3CQ15386 1083 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 MFSD14BQ5SR56 506 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 HDXQ7Z353 690 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 SUGP1Q8IWZ8 645 aaKnown RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 LCORLQ8N3X6 602 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 BANK1Q8NDB2 785 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 FBXW7Q969H0 707 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 ZNF274Q96GC6 653 aaPredicted RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 ARMT1Q9H993 441 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 RAB21Q9UL25 225 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 SALL1Q9NSC2 1324 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 A0A1B0GVL5 298 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 PATL2C9JE40 543 aaKnown RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 MYO1BO43795 1136 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 CPP00450 1065 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 SLC3A2P08195 630 aaKnown RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 UBASH3AP57075 661 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 DYNLL1P63167 89 aaKnown RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 EXOSC10Q01780 885 aaKnown RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 VSTM4Q8IW00 320 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.66□□□□□ -0.387e-7■■■□□ 15.6
CUX1-204ENST00000393824 COA1Q9GZY4 146 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 TMX4Q9H1E5 349 aaPredicted RBP12.66□□□□□ -0.38
CUX1-204ENST00000393824 HELLSQ9NRZ9 838 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 VPS18Q9P253 973 aa12.66□□□□□ -0.38
CUX1-204ENST00000393824 PTPDC1A2A3K4 754 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 POTEB2H3BUK9 544 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 PPIP5K2O43314 1243 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 ECE2O60344 883 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 MBD4O95243 580 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 CTDNEP1O95476 244 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 CYP7A1P22680 504 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 LMOD1P29536 600 aaPredicted RBP12.65□□□□□ -0.38
CUX1-204ENST00000393824 TUBB4BP68371 445 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 SWT1Q5T5J6 900 aaKnown RBP12.65□□□□□ -0.38
CUX1-204ENST00000393824 DSCC1Q9BVC3 393 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 PDE11AQ9HCR9 933 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 PDS5AQ29RF7 1337 aaKnown RBP12.65□□□□□ -0.38
CUX1-204ENST00000393824 MYH7P12883 1935 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 MYH13Q9UKX3 1938 aa12.65□□□□□ -0.38
CUX1-204ENST00000393824 F8W031 263 aaPredicted RBP12.65□□□□□ -0.39
CUX1-204ENST00000393824 EIF3JO75822 258 aaKnown RBP12.65□□□□□ -0.39
CUX1-204ENST00000393824 ATP1A3P13637 1013 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 RASSF7Q02833 373 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 EVX2Q03828 476 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 LINC00301Q8NCQ3 95 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 NKX2-3Q8TAU0 364 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 L1RE1Q9UN81 338 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 PCDHAC2Q9Y5I4 1007 aa12.65□□□□□ -0.39
CUX1-204ENST00000393824 STX10O60499 249 aa12.64□□□□□ -0.39
CUX1-204ENST00000393824 ZFYP08048 801 aaPredicted RBP12.64□□□□□ -0.39
CUX1-204ENST00000393824 HOMEZQ8IX15 550 aa12.64□□□□□ -0.39
CUX1-204ENST00000393824 MSANTD4Q8NCY6 345 aa12.64□□□□□ -0.39
CUX1-204ENST00000393824 KCNG4Q8TDN1 519 aa12.64□□□□□ -0.39
CUX1-204ENST00000393824 STRBPQ96SI9 672 aaKnown RBP12.64□□□□□ -0.39
CUX1-204ENST00000393824 RIOK1Q9BRS2 568 aaKnown RBP12.64□□□□□ -0.39
CUX1-204ENST00000393824 SYT17Q9BSW7 474 aa12.64□□□□□ -0.39
CUX1-204ENST00000393824 DEF6Q9H4E7 631 aa12.64□□□□□ -0.39
CUX1-204ENST00000393824 EPB41L4AQ9HCS5 686 aaPredicted RBP12.64□□□□□ -0.39
CUX1-204ENST00000393824 SOCS7O14512 581 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 YEATS4O95619 227 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 TOP1P11387 765 aaKnown RBP12.63□□□□□ -0.39
CUX1-204ENST00000393824 FOXR1Q6PIV2 292 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 SRGAP1Q7Z6B7 1085 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 SDR42E1Q8WUS8 393 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 DPF2Q92785 391 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 PSMD1Q99460 953 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 CEP83Q9Y592 693 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 TBX2Q13207 712 aaPredicted RBP12.63□□□□□ -0.39
CUX1-204ENST00000393824 RTKN2Q8IZC4 609 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 FAM177A1Q8N128 213 aaPredicted RBP12.63□□□□□ -0.39
CUX1-204ENST00000393824 WDR66Q8TBY9 1149 aa12.63□□□□□ -0.39
CUX1-204ENST00000393824 DHX58Q96C10 678 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms