RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC45A1Q9Y2W3 748 aa11.92□□□□□ -0.5
VPS53-202ENST00000389040 MYH1P12882 1939 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 IGKV6D-41A0A0C4DH26 115 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 A0A0G2JLL6 359 aaPredicted RBP11.91□□□□□ -0.5
VPS53-202ENST00000389040 HMGB1P09429 215 aaKnown RBP11.91□□□□□ -0.5
VPS53-202ENST00000389040 AKR1B1P15121 316 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 NOVP48745 357 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 BACE1P56817 501 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 TFAP4Q01664 338 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 COL9A3Q14050 684 aaPredicted RBP11.91□□□□□ -0.5
VPS53-202ENST00000389040 PRRT2Q7Z6L0 340 aaPredicted RBP11.91□□□□□ -0.5
VPS53-202ENST00000389040 IQCA1Q86XH1 822 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 JMYQ8N9B5 988 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 PROCA1Q8NCQ7 364 aaPredicted RBP11.91□□□□□ -0.5
VPS53-202ENST00000389040 LPAR1Q92633 364 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 CHAMP1Q96JM3 812 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 TPCN1Q9ULQ1 816 aa11.91□□□□□ -0.5
VPS53-202ENST00000389040 RANBP6O60518 1105 aaKnown RBP11.9□□□□□ -0.5
VPS53-202ENST00000389040 TTLL1O95922 423 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 SLURP2P0DP57 97 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 XRCC6P12956 609 aaKnown RBP eCLIP11.9□□□□□ -0.58e-6■■□□□ 13.6
VPS53-202ENST00000389040 GUCY1A2P33402 732 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 MRE11P49959 708 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 HAND2P61296 217 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 EVX2Q03828 476 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 ICA1Q05084 483 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 SPP2Q13103 211 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 PABPC4Q13310 644 aaKnown RBP eCLIP11.9□□□□□ -0.5
VPS53-202ENST00000389040 SEPT2Q15019 361 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 DGKHQ86XP1 1220 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 NCOA7Q8NI08 942 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 C12orf42Q96LP6 360 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 NBPF3Q9H094 633 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 MTMR4Q9NYA4 1195 aa11.9□□□□□ -0.5
VPS53-202ENST00000389040 SMIM22K7EJ46 135 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 STX6O43752 255 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 ZSCAN22P10073 491 aaPredicted RBP11.9□□□□□ -0.51
VPS53-202ENST00000389040 SYT1P21579 422 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 GJB2P29033 226 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 GJA5P36382 358 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 JAG1P78504 1218 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 HTRA3P83110 453 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 KIF23Q02241 960 aaPredicted RBP11.9□□□□□ -0.51
VPS53-202ENST00000389040 ST3GAL1Q11201 340 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 TOB2Q14106 344 aaPredicted RBP11.9□□□□□ -0.51
VPS53-202ENST00000389040 USP17L2Q6R6M4 530 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.51
VPS53-202ENST00000389040 TBC1D10CQ8IV04 446 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 GPT2Q8TD30 523 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 NEK1Q96PY6 1258 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.9□□□□□ -0.51
VPS53-202ENST00000389040 SAGE1Q9NXZ1 904 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 TMX2Q9Y320 296 aa11.9□□□□□ -0.51
VPS53-202ENST00000389040 E7EWF7 191 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 PRDM1O75626 825 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 NCLP19338 710 aaKnown RBP11.89□□□□□ -0.51
VPS53-202ENST00000389040 SART3Q15020 963 aaKnown RBP11.89□□□□□ -0.51
VPS53-202ENST00000389040 ANKRD23Q86SG2 305 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 NECAB1Q8N987 351 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 ANKS1AQ92625 1134 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 TCEANC2Q96MN5 208 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 CFHR5Q9BXR6 569 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 GRPEL1Q9HAV7 217 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 GOPCQ9HD26 462 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 TOMM22Q9NS69 142 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 TMOD4Q9NZQ9 345 aa11.89□□□□□ -0.51
VPS53-202ENST00000389040 SIPA1L1O43166 1804 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 CCL15-CCL14A0A0B4J2E2 113 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 TRIM75PA6NK02 468 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 CCL15Q16663 113 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 CAVIN1Q6NZI2 390 aaKnown RBP11.88□□□□□ -0.51
VPS53-202ENST00000389040 IFNL1Q8IU54 200 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 TMTC2Q8N394 836 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 BEGAINQ9BUH8 593 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 ZSWIM5Q9P217 1185 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 WDR19Q8NEZ3 1342 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 MBD3O95983 291 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 EEF2P13639 858 aaKnown RBP11.88□□□□□ -0.51
VPS53-202ENST00000389040 HOXA7P31268 230 aaPredicted RBP11.88□□□□□ -0.51
VPS53-202ENST00000389040 RRP12Q5JTH9 1297 aaKnown RBP11.88□□□□□ -0.51
VPS53-202ENST00000389040 SIAH1Q8IUQ4 282 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 GMCL1P1Q8NEA9 526 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 CEP95Q96GE4 821 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 FEZ1Q99689 392 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 AGTPBP1Q9UPW5 1226 aa11.88□□□□□ -0.51
VPS53-202ENST00000389040 KDM4AO75164 1064 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 MCM5P33992 734 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 MTMR2Q13614 643 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 ZSCAN23Q3MJ62 389 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 NOM1Q5C9Z4 860 aaKnown RBP11.87□□□□□ -0.51
VPS53-202ENST00000389040 FAM47AQ5JRC9 791 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 RCSD1Q6JBY9 416 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 GAS2L3Q86XJ1 694 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 STK11IPQ8N1F8 1099 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 BRI3BPQ8WY22 251 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 ZSCAN10Q96SZ4 725 aaPredicted RBP11.87□□□□□ -0.51
VPS53-202ENST00000389040 UBAC1Q9BSL1 405 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 VCPKMTQ9H867 229 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 IL17RBQ9NRM6 502 aa11.87□□□□□ -0.51
VPS53-202ENST00000389040 PNMA3Q9UL41 463 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms