RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 PTPRFP10586 1907 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 FOXN1O15353 648 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 TBC1D8O95759 1140 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 VCAM1P19320 739 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 TAF1CQ15572 869 aaPredicted RBP22.1■■□□□ 1.13
SSU72-203ENST00000378725 CCDC178Q5BJE1 867 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 ANKS1AQ92625 1134 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 R3HDMLQ9H3Y0 253 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 ZFYVE28Q9HCC9 887 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 LOC285556D6RIA3 1793 aa22.1■■□□□ 1.13
SSU72-203ENST00000378725 EIF5BO60841 1220 aaKnown RBP22.09■■□□□ 1.13
SSU72-203ENST00000378725 CRHR2Q13324 411 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 RCSD1Q6JBY9 416 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 CYB5R4Q7L1T6 521 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 IQCA1Q86XH1 822 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 DGKHQ86XP1 1220 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 RASEFQ8IZ41 740 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 GOPCQ9HD26 462 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 STX8Q9UNK0 236 aa22.09■■□□□ 1.13
SSU72-203ENST00000378725 USP17L15C9J2P7 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L13C9JLJ4 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L11C9JVI0 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L18D6R9N7 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L22D6RA61 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L17D6RBQ6 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L19D6RCP7 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L20D6RJB6 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 F5H6K3 240 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 OSBPP22059 807 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 KLRC3Q07444 240 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 USP17L24Q0WX57 530 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 NOM1Q5C9Z4 860 aaKnown RBP22.08■■□□□ 1.13
SSU72-203ENST00000378725 CATSPERGQ6ZRH7 1159 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 RALYLQ86SE5 291 aaKnown RBP22.08■■□□□ 1.13
SSU72-203ENST00000378725 GMCL1P1Q8NEA9 526 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 ZSCAN10Q96SZ4 725 aaPredicted RBP22.08■■□□□ 1.13
SSU72-203ENST00000378725 ZKSCAN3Q9BRR0 538 aa22.08■■□□□ 1.13
SSU72-203ENST00000378725 TLR2O60603 784 aa22.07■■□□□ 1.12
SSU72-203ENST00000378725 CYP2C8P10632 490 aa22.07■■□□□ 1.12
SSU72-203ENST00000378725 TOP1P11387 765 aaKnown RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 ZKSCAN1P17029 563 aaPredicted RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 CTCFP49711 727 aaPredicted RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 C8orf34Q49A92 452 aa22.07■■□□□ 1.12
SSU72-203ENST00000378725 MB21D2Q8IYB1 491 aaPredicted RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 PARK7Q99497 189 aaKnown RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 TMEM47Q9BQJ4 181 aa22.07■■□□□ 1.12
SSU72-203ENST00000378725 ASCC2Q9H1I8 757 aaPredicted RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 RPAP3Q9H6T3 665 aaPredicted RBP22.07■■□□□ 1.12
SSU72-203ENST00000378725 PNMA3Q9UL41 463 aa22.07■■□□□ 1.12
SSU72-203ENST00000378725 ADGRA2Q96PE1 1338 aa22.06■■□□□ 1.12
SSU72-203ENST00000378725 WDR46O15213 610 aaKnown RBP22.06■■□□□ 1.12
SSU72-203ENST00000378725 NDUFB10O96000 172 aa22.06■■□□□ 1.12
SSU72-203ENST00000378725 HSPA8P11142 646 aaKnown RBP22.06■■□□□ 1.12
SSU72-203ENST00000378725 SPICE1Q8N0Z3 855 aa22.06■■□□□ 1.12
SSU72-203ENST00000378725 LRRC47Q8N1G4 583 aaKnown RBP22.06■■□□□ 1.12
SSU72-203ENST00000378725 TSKSQ9UJT2 592 aa22.06■■□□□ 1.12
SSU72-203ENST00000378725 KRT32Q14532 448 aa22.05■■□□□ 1.12
SSU72-203ENST00000378725 C17orf99Q6UX52 265 aa22.05■■□□□ 1.12
SSU72-203ENST00000378725 ENAHQ8N8S7 591 aaPredicted RBP22.05■■□□□ 1.12
SSU72-203ENST00000378725 P2RX7Q99572 595 aaKnown RBP22.05■■□□□ 1.12
SSU72-203ENST00000378725 MTA3Q9BTC8 594 aa22.05■■□□□ 1.12
SSU72-203ENST00000378725 SNX14Q9Y5W7 946 aa22.05■■□□□ 1.12
SSU72-203ENST00000378725 TNKSO95271 1327 aa22.05■■□□□ 1.12
SSU72-203ENST00000378725 GPR25O00155 361 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 SEC24BO95487 1268 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 ANTXR2P58335 489 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 IRX3P78415 501 aaPredicted RBP22.04■■□□□ 1.12
SSU72-203ENST00000378725 SEC23AQ15436 765 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 ADCK5Q3MIX3 580 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 SLFN13Q68D06 897 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 NEK1Q96PY6 1258 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 UBAC1Q9BSL1 405 aa22.04■■□□□ 1.12
SSU72-203ENST00000378725 COL9A3Q14050 684 aaPredicted RBP22.03■■□□□ 1.12
SSU72-203ENST00000378725 IGDCC4Q8TDY8 1250 aa22.03■■□□□ 1.12
SSU72-203ENST00000378725 GMCL1Q96IK5 515 aa22.03■■□□□ 1.12
SSU72-203ENST00000378725 MCM5P33992 734 aa22.02■■□□□ 1.12
SSU72-203ENST00000378725 GCLCP48506 637 aaPredicted RBP22.02■■□□□ 1.12
SSU72-203ENST00000378725 COG2Q14746 738 aa22.02■■□□□ 1.12
SSU72-203ENST00000378725 FAM83BQ5T0W9 1011 aa22.02■■□□□ 1.12
SSU72-203ENST00000378725 LBX2Q6XYB7 198 aa22.02■■□□□ 1.12
SSU72-203ENST00000378725 CHST3Q7LGC8 479 aa22.02■■□□□ 1.12
SSU72-203ENST00000378725 HOXC10Q9NYD6 342 aa22.02■■□□□ 1.12
SSU72-203ENST00000378725 IFIT3O14879 490 aaKnown RBP22.01■■□□□ 1.11
SSU72-203ENST00000378725 RAD21O60216 631 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 BCRP11274 1271 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 LBX1P52954 281 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 HERVK_113P62684 666 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 EXOSC10Q01780 885 aaKnown RBP22.01■■□□□ 1.11
SSU72-203ENST00000378725 POTEEQ6S8J3 1075 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 SMCR8Q8TEV9 937 aaPredicted RBP22.01■■□□□ 1.11
SSU72-203ENST00000378725 NUP88Q99567 741 aaPredicted RBP22.01■■□□□ 1.11
SSU72-203ENST00000378725 TANGO6Q9C0B7 1094 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 CPA4Q9UI42 421 aa22.01■■□□□ 1.11
SSU72-203ENST00000378725 PRC1O43663 620 aa22■■□□□ 1.11
SSU72-203ENST00000378725 HMGB1P09429 215 aaKnown RBP22■■□□□ 1.11
SSU72-203ENST00000378725 BMP3P12645 472 aa22■■□□□ 1.11
SSU72-203ENST00000378725 MCCP23508 829 aa22■■□□□ 1.11
SSU72-203ENST00000378725 DSG3P32926 999 aa22■■□□□ 1.11
SSU72-203ENST00000378725 SART3Q15020 963 aaKnown RBP22■■□□□ 1.11
SSU72-203ENST00000378725 IFIT1BQ5T764 474 aaKnown RBP22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms