RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 KRT14P02533 472 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 IRX5P78411 483 aaPredicted RBP9.58□□□□□ -0.88
LIG3-202ENST00000378526 EP400NLQ6ZTU2 488 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 PEX26Q7Z412 305 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 ORC3Q9UBD5 711 aaPredicted RBP9.58□□□□□ -0.88
LIG3-202ENST00000378526 GOLGA8CPA6NN73 597 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 PDE6AP16499 860 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 PDE6BP35913 854 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 CTTNQ14247 550 aaKnown RBP9.58□□□□□ -0.88
LIG3-202ENST00000378526 TSC22D1Q15714 1073 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 TBC1D9Q6ZT07 1266 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 THAP11Q96EK4 314 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 SIKE1Q9BRV8 207 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 ZRANB1Q9UGI0 708 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 EXOSC9Q06265 439 aaKnown RBP9.58□□□□□ -0.88
LIG3-202ENST00000378526 CRYMQ14894 314 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 ASIC2Q16515 512 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 ALDH1L2Q3SY69 923 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 CCDC117Q8IWD4 279 aaPredicted RBP9.58□□□□□ -0.88
LIG3-202ENST00000378526 TRAK1Q9UPV9 953 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 NOC2LQ9Y3T9 749 aaKnown RBP9.58□□□□□ -0.88
LIG3-202ENST00000378526 CASC4Q6P4E1 433 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 SLF2Q8IX21 1173 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 GIPC2Q8TF65 315 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 GSDMAQ96QA5 445 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 PDHA1P08559 390 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 GNAT2P19087 354 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 SLC8A3P57103 927 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 FSCBQ5H9T9 825 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 TMX3Q96JJ7 454 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 NDEL1Q9GZM8 345 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 MPP6Q9NZW5 540 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 TNNC2P02585 160 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CALML3P27482 149 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 RARS2Q5T160 578 aaKnown RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 TERB1Q8NA31 727 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 TTC41PQ6P2S7 1318 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CCDC151A5D8V7 595 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 BCAR3O75815 825 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 WDR47O94967 919 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 EIF3BP55884 814 aaKnown RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 KLC1Q07866 573 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 MYO1AQ9UBC5 1043 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 hCG_2014768A0A024R1R8 64 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 MAP3K12Q12852 859 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 HIBCHQ6NVY1 386 aaPredicted RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 CEP85Q6P2H3 762 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 EPHB4P54760 987 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CYTH1Q15438 398 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 HDGFL1Q5TGJ6 251 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 ANKRD36BQ8N2N9 1353 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 LZTS3O60299 673 aaPredicted RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 KAZNQ674X7 775 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CNNM4Q6P4Q7 775 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CCDC84Q86UT8 332 aaPredicted RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 ANKRD35Q8N283 1001 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CRACR2BQ8N4Y2 399 aaPredicted RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 TTLL11Q8NHH1 800 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 USP16Q9Y5T5 823 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 BZW2Q9Y6E2 419 aaKnown RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 GSNP06396 782 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 PARP9Q8IXQ6 854 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 NCOA7Q8NI08 942 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 TRIM27P14373 513 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 CCT2P78371 535 aaKnown RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 CDH24Q86UP0 819 aa9.57□□□□□ -0.88
LIG3-202ENST00000378526 ZNF444Q8N0Y2 327 aaPredicted RBP9.57□□□□□ -0.88
LIG3-202ENST00000378526 GSTA4O15217 222 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TCP1P17987 556 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 KRT73Q86Y46 540 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 IQUBQ8NA54 791 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 LRRC59Q96AG4 307 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 SYNRGQ9UMZ2 1314 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TBKBP1A7MCY6 615 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 H3BRJ5 948 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 NCBP1Q09161 790 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 RCN2Q14257 317 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TMEM67Q5HYA8 995 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 NCAPH2Q6IBW4 605 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TRIM59Q8IWR1 403 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 IL1RL1Q01638 556 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 NFRKBQ6P4R8 1299 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TMEM60Q9H2L4 133 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 IPO11Q9UI26 975 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 AMFRQ9UKV5 643 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TERF2Q15554 542 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TMC5Q6UXY8 1006 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 FBXL13Q8NEE6 735 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 RPGRQ92834 1020 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 CDCA7LQ96GN5 454 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 IFIH1Q9BYX4 1025 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 HNRNPRO43390 633 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 ALDH1L1O75891 902 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 HMGB2P26583 209 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 PDE4BQ07343 736 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 WDR44Q5JSH3 913 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 NOC4LQ9BVI4 516 aaKnown RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 ASCC2Q9H1I8 757 aaPredicted RBP9.56□□□□□ -0.88
LIG3-202ENST00000378526 NEUROG2Q9H2A3 272 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 EMC3Q9P0I2 261 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms