RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 MROH5Q6ZUA9 1318 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 MAP2K7O14733 419 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 PTPREP23469 700 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 AFMP43652 599 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 PLCD1P51178 756 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 RRP12Q5JTH9 1297 aaKnown RBP12.59□□□□□ -0.39
CCDC40-203ENST00000374877 HDXQ7Z353 690 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 CMTR1Q8N1G2 835 aaKnown RBP12.59□□□□□ -0.39
CCDC40-203ENST00000374877 CDC5LQ99459 802 aaKnown RBP12.59□□□□□ -0.39
CCDC40-203ENST00000374877 SEC31BQ9NQW1 1179 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 PCDHB6Q9Y5E3 794 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 SPEF2Q9C093 1822 aa12.59□□□□□ -0.39
CCDC40-203ENST00000374877 A0A1B0GTH6 734 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 MYO1CO00159 1063 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 ERLIN1O75477 346 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 NR5A1Q13285 461 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 PANX2Q96RD6 677 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 RASSF4Q9H2L5 321 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 SARSP49591 514 aaKnown RBP12.58□□□□□ -0.4
CCDC40-203ENST00000374877 BEND6Q5SZJ8 279 aaPredicted RBP12.58□□□□□ -0.4
CCDC40-203ENST00000374877 RGS22Q8NE09 1264 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 NLRP3Q96P20 1036 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 CNNM1Q9NRU3 951 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 ZNF532Q9HCE3 1301 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 N4BP1O75113 896 aaKnown RBP12.58□□□□□ -0.4
CCDC40-203ENST00000374877 EIF3JO75822 258 aaKnown RBP12.58□□□□□ -0.4
CCDC40-203ENST00000374877 MMP1P03956 469 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 CASP1P29466 404 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 ACTN2P35609 894 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 IGHMBP2P38935 993 aaKnown RBP12.58□□□□□ -0.4
CCDC40-203ENST00000374877 BAG6P46379 1132 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 CTDSPL2Q05D32 466 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 SF3B2Q13435 895 aaKnown RBP12.58□□□□□ -0.4
CCDC40-203ENST00000374877 TRIM22Q8IYM9 498 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 WASF1Q92558 559 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 ABCB6Q9NP58 842 aa12.58□□□□□ -0.4
CCDC40-203ENST00000374877 CTAGE9A4FU28 777 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 PHACTR2O75167 634 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 RILPL1Q5EBL4 403 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 NT5DC1Q5TFE4 455 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 NLGN1Q8N2Q7 840 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 SLC35F6Q8N357 371 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 TRIML1Q8N9V2 468 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 CNBD1Q8NA66 436 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 CCDC102AQ96A19 550 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 AIDAQ96BJ3 306 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 ZKSCAN3Q9BRR0 538 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 PIH1D3Q9NQM4 214 aaKnown RBP12.57□□□□□ -0.4
CCDC40-203ENST00000374877 QSER1Q2KHR3 1735 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 POTEB2H3BUK9 544 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 FMNL1O95466 1100 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-203ENST00000374877 CASP14P31944 242 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 COL23A1Q86Y22 540 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-203ENST00000374877 SMYD4Q8IYR2 804 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-203ENST00000374877 VGLL2Q8N8G2 317 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 ACRBPQ8NEB7 543 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 CSRNP2Q9H175 543 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 PSD3Q9NYI0 1048 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 ZSWIM5Q9P217 1185 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 SYNRGQ9UMZ2 1314 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 CCDC125Q86Z20 511 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 ELOA2Q8IYF1 753 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-203ENST00000374877 FAN1Q9Y2M0 1017 aa12.57□□□□□ -0.4
CCDC40-203ENST00000374877 ACTN4O43707 911 aaKnown RBP12.56□□□□□ -0.4
CCDC40-203ENST00000374877 ERCC5P28715 1186 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-203ENST00000374877 FILIP1LQ4L180 1135 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 KANK3Q6NY19 840 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 SGMS1Q86VZ5 419 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 NAA15Q9BXJ9 866 aaKnown RBP12.56□□□□□ -0.4
CCDC40-203ENST00000374877 NAPBQ9H115 298 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 CABP5Q9NP86 173 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 RSPH14Q9UHP6 348 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 COBLO75128 1261 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 EZH2Q15910 746 aaKnown RBP12.56□□□□□ -0.4
CCDC40-203ENST00000374877 HSP90B2PQ58FF3 399 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 PLCD3Q8N3E9 789 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 NUP133Q8WUM0 1156 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 WWC3Q9ULE0 1092 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 RRP15Q9Y3B9 282 aaKnown RBP12.56□□□□□ -0.4
CCDC40-203ENST00000374877 PNPLA7Q6ZV29 1317 aa12.56□□□□□ -0.4
CCDC40-203ENST00000374877 MFAP3LO75121 409 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 SERPINB2P05120 415 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 PDE6AP16499 860 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 IFNAR1P17181 557 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CCT6AP40227 531 aaKnown RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 VSNL1P62760 191 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 RTN1Q16799 776 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 SPATA1Q5VX52 437 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 C3orf67Q6ZVT6 689 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 OXER1Q8TDS5 423 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 HNRNPLLQ8WVV9 542 aaKnown RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 STK32BQ9NY57 414 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CTAGE15A4D2H0 777 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 PDE8BO95263 885 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CTAGE8P0CG41 777 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CD44P16070 742 aaKnown RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 EN1Q05925 392 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 PRR5LQ6MZQ0 368 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 SRLQ86TD4 932 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CTAGE6Q86UF2 777 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms