RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 WDR19Q8NEZ3 1342 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 CDK8P49336 464 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 GABPAQ06546 454 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 MKRN3Q13064 507 aaKnown RBP16.54■□□□□ 0.24
HMGA1-203ENST00000374116 SBK1Q52WX2 424 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-203ENST00000374116 ARMC9Q7Z3E5 817 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 FOXP4Q8IVH2 680 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-203ENST00000374116 NKX2-3Q8TAU0 364 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 CNKSR2Q8WXI2 1034 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 ZNF341Q9BYN7 854 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 ZHX1Q9UKY1 873 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-203ENST00000374116 JAK2O60674 1132 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 SHMT1P34896 483 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 IREB2P48200 963 aaKnown RBP16.54■□□□□ 0.24
HMGA1-203ENST00000374116 VGLL4Q14135 290 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 FERMT3Q86UX7 667 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.54■□□□□ 0.24
HMGA1-203ENST00000374116 ELP3Q9H9T3 547 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 KIF3AQ9Y496 699 aa16.54■□□□□ 0.24
HMGA1-203ENST00000374116 PAPPA2Q9BXP8 1791 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 ZNF213O14771 459 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 HSPA6P17066 643 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 MAP3K10Q02779 954 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 APOBRQ0VD83 1088 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 UVSSAQ2YD98 709 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 PAXIP1Q6ZW49 1069 aaPredicted RBP16.53■□□□□ 0.24
HMGA1-203ENST00000374116 TBC1D10CQ8IV04 446 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 EHD4Q9H223 541 aa16.53■□□□□ 0.24
HMGA1-203ENST00000374116 ZSCAN16Q9H4T2 348 aaPredicted RBP16.53■□□□□ 0.24
HMGA1-203ENST00000374116 HERC5Q9UII4 1024 aaKnown RBP16.53■□□□□ 0.24
HMGA1-203ENST00000374116 TBC1D12O60347 775 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 CTDNEP1O95476 244 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 PDIA3P30101 505 aaKnown RBP16.52■□□□□ 0.24
HMGA1-203ENST00000374116 ANTXR2P58335 489 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 C16orf86Q6ZW13 317 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 METTL16Q86W50 562 aaKnown RBP16.52■□□□□ 0.24
HMGA1-203ENST00000374116 NSUN7Q8NE18 718 aaKnown RBP16.52■□□□□ 0.24
HMGA1-203ENST00000374116 HOOK2Q96ED9 719 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 TOMM22Q9NS69 142 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 TLL2Q9Y6L7 1015 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 MYH8P13535 1937 aa16.52■□□□□ 0.24
HMGA1-203ENST00000374116 H3BQV1 296 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 MAP3K9P80192 1104 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 RRP12Q5JTH9 1297 aaKnown RBP16.52■□□□□ 0.23
HMGA1-203ENST00000374116 PPP4R3BQ5MIZ7 849 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 IFFO2Q5TF58 517 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 CLEC10AQ8IUN9 316 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 ZNF710Q8N1W2 664 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 NCOA7Q8NI08 942 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 CREBZFQ9NS37 354 aa16.52■□□□□ 0.23
HMGA1-203ENST00000374116 MPHOSPH10O00566 681 aaKnown RBP16.51■□□□□ 0.23
HMGA1-203ENST00000374116 AKR1B1P15121 316 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 MAP3K11Q16584 847 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 CERKLQ49MI3 558 aaPredicted RBP16.51■□□□□ 0.23
HMGA1-203ENST00000374116 FAM47AQ5JRC9 791 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 LDLRAD1Q5T700 205 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 CYP4F22Q6NT55 531 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 TATDN1Q6P1N9 297 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 CHST3Q7LGC8 479 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 RNF214Q8ND24 703 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 MKNK2Q9HBH9 465 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 PRDM10Q9NQV6 1147 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 ZNF112Q9UJU3 913 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 SNCAIPQ9Y6H5 919 aa16.51■□□□□ 0.23
HMGA1-203ENST00000374116 GH2P01242 217 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 CAP2P40123 477 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 RESTQ13127 1097 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 ANKRD13AQ8IZ07 590 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 PIBF1Q8WXW3 757 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 SPATA32Q96LK8 384 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 CSADQ9Y600 493 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 NEDD4P46934 1319 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 ATAD5Q96QE3 1844 aa16.5■□□□□ 0.23
HMGA1-203ENST00000374116 RASA1P20936 1047 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 ZNF157P51786 506 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-203ENST00000374116 FKBP1BP68106 108 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 DDX11Q96FC9 970 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 GPHNQ9NQX3 736 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-203ENST00000374116 MYH15Q9Y2K3 1946 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 PTPDC1A2A3K4 754 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 PRC1O43663 620 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 FAM173BQ6P4H8 233 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 LEO1Q8WVC0 666 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-203ENST00000374116 SLC10A4Q96EP9 437 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 OTUD5Q96G74 571 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 CFAP45Q9UL16 551 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 ROBO3Q96MS0 1386 aa16.49■□□□□ 0.23
HMGA1-203ENST00000374116 GOLGA6L4A6NEF3 574 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 RANBP6O60518 1105 aaKnown RBP16.48■□□□□ 0.23
HMGA1-203ENST00000374116 CTNND1O60716 968 aaKnown RBP16.48■□□□□ 0.23
HMGA1-203ENST00000374116 GJA5P36382 358 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 PDE4BQ07343 736 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 ABCB5Q2M3G0 1257 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 TPRNQ4KMQ1 711 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 AKNAD1Q5T1N1 836 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 SCYL3Q8IZE3 742 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 OPTNQ96CV9 577 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 ZIC5Q96T25 663 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 SPTLC3Q9NUV7 552 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms