RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PARD6BQ9BYG5 372 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 PNMA6AP0CW24 399 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 KRT15P19012 456 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 MORC3Q14149 939 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 E2F4Q16254 413 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 IP6K1Q92551 441 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 ARL1P40616 181 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 CTDSPL2Q05D32 466 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 SYCE1Q8N0S2 351 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 ARHGAP24Q8N264 748 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 RAB17Q9H0T7 212 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 CLIC4Q9Y696 253 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 ADCY10Q96PN6 1610 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 PHLPP2Q6ZVD8 1323 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 A0A087WUV0 522 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 DNM2P50570 870 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 MRPL12P52815 198 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 CEP128Q6ZU80 1094 aa21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 PAXIP1Q6ZW49 1069 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.65■■□□□ 1.06
CCDC88B-202ENST00000356786 TRIM68Q6AZZ1 485 aa21.64■■□□□ 1.06
CCDC88B-202ENST00000356786 NUCKS1Q9H1E3 243 aaKnown RBP21.64■■□□□ 1.06
CCDC88B-202ENST00000356786 FAM135BQ49AJ0 1406 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 STX2P32856 288 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 GCKRQ14397 625 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 PPP2R5BQ15173 497 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 KDM5AP29375 1690 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 KIAA0232Q92628 1395 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 KCNK3O14649 394 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 IFT88Q13099 833 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 RPAINQ86UA6 219 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 FAM114A2Q9NRY5 505 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 HOMER3Q9NSC5 361 aa21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 ZNF219Q9P2Y4 722 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-202ENST00000356786 ENC1O14682 589 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 PTPN21Q16825 1174 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 ANKRD20A3Q5VUR7 823 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 FBXO18Q8NFZ0 1043 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 SNX29Q8TEQ0 813 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 VEZTQ9HBM0 779 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 FAM169AQ9Y6X4 670 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 ERVK-7P63135 1459 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 CASP14P31944 242 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 NELFCDQ8IXH7 590 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 PLBD2Q8NHP8 589 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 ZNF790Q6PG37 636 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 SDCCAG8Q86SQ7 713 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 TBC1D31Q96DN5 1066 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 IQCDQ96DY2 449 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 OSBPL3Q9H4L5 887 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 ZMYND10O75800 440 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 DZIP3Q86Y13 1208 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 LGR6Q9HBX8 967 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 STAP2Q9UGK3 403 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 JAG2Q9Y219 1238 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 MYOM2P54296 1465 aa21.63■■□□□ 1.05
CCDC88B-202ENST00000356786 KRT5P13647 590 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 ZAP70P43403 619 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 SNCBQ16143 134 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 TBC1D7Q9P0N9 293 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 KLHL14Q9P2G3 628 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 RASSF2P50749 326 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 ANKRD13CQ8N6S4 541 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 TTC16Q8NEE8 873 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 ORAI2Q96SN7 254 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 RTEL1Q9NZ71 1219 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 PLXNC1O60486 1568 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 TXNDC9O14530 226 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 BUB1O43683 1085 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 DPH6Q7L8W6 267 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 DCAF5Q96JK2 942 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 SCRN1Q12765 414 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 MAP4K1Q92918 833 aa21.62■■□□□ 1.05
CCDC88B-202ENST00000356786 SBNO1A3KN83 1393 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 BTBD18B2RXH4 712 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 NONOQ15233 471 aaKnown RBP eCLIP21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 SEPT14Q6ZU15 432 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 CABP7Q86V35 215 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 FRMD3A2A2Y4 597 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 KRIT1O00522 736 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 GUCY2DQ02846 1103 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 PLEKHG3A1L390 1219 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 ITGA6P23229 1130 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 KIFAP3Q92845 792 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 TPD52P55327 224 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 MUM1Q2TAK8 710 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 FAM184BQ9ULE4 1060 aa21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 PRDM15P57071 1507 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-202ENST00000356786 H7C1D1 291 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 IKBKBO14920 756 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 LRCH2Q5VUJ6 765 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 GBP5Q96PP8 586 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 ZBTB21Q9ULJ3 1066 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 KIF3CO14782 793 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 APBA1Q02410 837 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 RAD51AP2Q09MP3 1159 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 PHLDB2Q86SQ0 1253 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 FAM212AQ96EL1 285 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 DPH5Q9H2P9 285 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms