RNA–Protein interactions for RNA: ENST00000355560.4

CLK2-201, Transcript of CDC like kinase 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CLK2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK2-201ENST00000355560 ATF5Q9Y2D1 282 aaPredicted RBP29.58■■■□□ 2.33
CLK2-201ENST00000355560 MYO3BQ8WXR4 1341 aa29.58■■■□□ 2.33
CLK2-201ENST00000355560 A0A1B0GVL5 298 aa29.57■■■□□ 2.32
CLK2-201ENST00000355560 KINO60870 393 aaKnown RBP29.57■■■□□ 2.32
CLK2-201ENST00000355560 RASGRP2Q7LDG7 609 aa29.57■■■□□ 2.32
CLK2-201ENST00000355560 BRMS1Q9HCU9 246 aa29.57■■■□□ 2.32
CLK2-201ENST00000355560 SHMT1P34896 483 aa29.57■■■□□ 2.32
CLK2-201ENST00000355560 COL4A5P29400 1685 aa29.57■■■□□ 2.32
CLK2-201ENST00000355560 PALM3A6NDB9 673 aaPredicted RBP29.56■■■□□ 2.32
CLK2-201ENST00000355560 EHD4Q9H223 541 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 CABP5Q9NP86 173 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 FAM198AQ9UFP1 575 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 POLD1P28340 1107 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 NDUFA8P51970 172 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 CCDC173Q0VFZ6 552 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 FMR1NBQ8N0W7 255 aaPredicted RBP29.56■■■□□ 2.32
CLK2-201ENST00000355560 DHX36Q9H2U1 1008 aaKnown RBP29.56■■■□□ 2.32
CLK2-201ENST00000355560 MTMR4Q9NYA4 1195 aa29.56■■■□□ 2.32
CLK2-201ENST00000355560 GOLGA8HP0CJ92 632 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 VEGFAP15692 232 aaPredicted RBP29.55■■■□□ 2.32
CLK2-201ENST00000355560 TGFB2P61812 414 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 NPY5RQ15761 445 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 CFAP100Q494V2 611 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 MTFR1LQ9H019 292 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 EIF4ENIF1Q9NRA8 985 aaKnown RBP29.55■■■□□ 2.32
CLK2-201ENST00000355560 PIM2Q9P1W9 311 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 SIPA1L1O43166 1804 aa29.55■■■□□ 2.32
CLK2-201ENST00000355560 TYRO3Q06418 890 aa29.54■■■□□ 2.32
CLK2-201ENST00000355560 SOGA3Q5TF21 947 aa29.54■■■□□ 2.32
CLK2-201ENST00000355560 CYTH3O43739 400 aa29.54■■■□□ 2.32
CLK2-201ENST00000355560 RAD17O75943 681 aa29.54■■■□□ 2.32
CLK2-201ENST00000355560 PARP1P09874 1014 aaKnown RBP29.54■■■□□ 2.32
CLK2-201ENST00000355560 SLC35G1Q2M3R5 365 aa29.54■■■□□ 2.32
CLK2-201ENST00000355560 IGKV6D-41A0A0C4DH26 115 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 CTAGE5O15320 804 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 CMA1P23946 247 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 NLRP5P59047 1200 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 RSBN1LQ6PCB5 846 aaPredicted RBP29.53■■■□□ 2.32
CLK2-201ENST00000355560 LZTS2Q9BRK4 669 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 TDRD3Q9H7E2 651 aaKnown RBP29.53■■■□□ 2.32
CLK2-201ENST00000355560 FAM205CA6NFA0 338 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 DDTLA6NHG4 134 aaPredicted RBP29.53■■■□□ 2.32
CLK2-201ENST00000355560 KLRF2D3W0D1 207 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 ZSCAN29Q8IWY8 852 aaPredicted RBP29.53■■■□□ 2.32
CLK2-201ENST00000355560 PCDHB6Q9Y5E3 794 aa29.53■■■□□ 2.32
CLK2-201ENST00000355560 PSMD14O00487 310 aa29.52■■■□□ 2.32
CLK2-201ENST00000355560 NPM3O75607 178 aaKnown RBP29.52■■■□□ 2.32
CLK2-201ENST00000355560 SLURP2P0DP57 97 aa29.52■■■□□ 2.32
CLK2-201ENST00000355560 EIF6P56537 245 aaKnown RBP29.52■■■□□ 2.32
CLK2-201ENST00000355560 EARS2Q5JPH6 523 aaKnown RBP29.52■■■□□ 2.32
CLK2-201ENST00000355560 USP17L2Q6R6M4 530 aa29.52■■■□□ 2.32
CLK2-201ENST00000355560 CLEC10AQ8IUN9 316 aa29.52■■■□□ 2.32
CLK2-201ENST00000355560 GPKOWQ92917 476 aaPredicted RBP eCLIP29.52■■■□□ 2.32
CLK2-201ENST00000355560 DNAJC18Q9H819 358 aa29.52■■■□□ 2.32
CLK2-201ENST00000355560 ATP2B1P20020 1258 aa29.51■■■□□ 2.32
CLK2-201ENST00000355560 TNFRSF25Q93038 417 aa29.51■■■□□ 2.32
CLK2-201ENST00000355560 PPP1R9BQ96SB3 815 aa29.51■■■□□ 2.32
CLK2-201ENST00000355560 PI4KBQ9UBF8 816 aa29.51■■■□□ 2.32
CLK2-201ENST00000355560 MRVI1Q9Y6F6 885 aa29.51■■■□□ 2.32
CLK2-201ENST00000355560 GREB1LQ9C091 1923 aaPredicted RBP29.51■■■□□ 2.31
CLK2-201ENST00000355560 PFKFB1P16118 471 aa29.51■■■□□ 2.31
CLK2-201ENST00000355560 LRRC47Q8N1G4 583 aaKnown RBP29.51■■■□□ 2.31
CLK2-201ENST00000355560 PRMT6Q96LA8 375 aaPredicted RBP29.51■■■□□ 2.31
CLK2-201ENST00000355560 VPS33BQ9H267 617 aa29.51■■■□□ 2.31
CLK2-201ENST00000355560 SASS6Q6UVJ0 657 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 SH3BP5LQ7L8J4 393 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 SPZ1Q9BXG8 430 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 SH3GLB2Q9NR46 395 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 MPHOSPH10O00566 681 aaKnown RBP29.5■■■□□ 2.31
CLK2-201ENST00000355560 TTLL1O95922 423 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 VIL1P09327 827 aaKnown RBP29.5■■■□□ 2.31
CLK2-201ENST00000355560 SHC4Q6S5L8 630 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 CLIC6Q96NY7 704 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 CPVLQ9H3G5 476 aa29.5■■■□□ 2.31
CLK2-201ENST00000355560 FAM196BA6NMK8 535 aa29.49■■■□□ 2.31
CLK2-201ENST00000355560 CUTAO60888 179 aa29.49■■■□□ 2.31
CLK2-201ENST00000355560 KRI1Q8N9T8 703 aaKnown RBP29.49■■■□□ 2.31
CLK2-201ENST00000355560 CEP131Q9UPN4 1083 aa29.49■■■□□ 2.31
CLK2-201ENST00000355560 USP17L5A8MUK1 530 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 PDHBP11177 359 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 UVSSAQ2YD98 709 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 DALRD3Q5D0E6 543 aaKnown RBP29.48■■■□□ 2.31
CLK2-201ENST00000355560 NIM1KQ8IY84 436 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 PPP1R1BQ9UD71 204 aaPredicted RBP29.48■■■□□ 2.31
CLK2-201ENST00000355560 CLIP2Q9UDT6 1046 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 BRCA1P38398 1863 aaKnown RBP29.48■■■□□ 2.31
CLK2-201ENST00000355560 CALML3P27482 149 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 CCDC17Q96LX7 622 aa29.48■■■□□ 2.31
CLK2-201ENST00000355560 NOM1Q5C9Z4 860 aaKnown RBP29.47■■■□□ 2.31
CLK2-201ENST00000355560 WWC2Q6AWC2 1192 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 HEATR3Q7Z4Q2 680 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 GMLQ99445 158 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 SDF4Q9BRK5 362 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 ZNRF3Q9ULT6 936 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 NOL7Q9UMY1 257 aaKnown RBP29.47■■■□□ 2.31
CLK2-201ENST00000355560 TRIM75PA6NK02 468 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 ZNF202O95125 648 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 R3HDM1Q15032 1099 aaKnown RBP29.47■■■□□ 2.31
CLK2-201ENST00000355560 TYW1BQ6NUM6 668 aa29.47■■■□□ 2.31
CLK2-201ENST00000355560 TRIM34Q9BYJ4 488 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms