RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 NAPBQ9H115 298 aa18.37■□□□□ 0.53
VAPA-201ENST00000340541 UNC93B1Q9H1C4 597 aa18.37■□□□□ 0.53
VAPA-201ENST00000340541 INHAP05111 366 aa18.36■□□□□ 0.53
VAPA-201ENST00000340541 FXR1P51114 621 aaKnown RBP eCLIP18.36■□□□□ 0.53
VAPA-201ENST00000340541 ZYXQ15942 572 aaKnown RBP18.36■□□□□ 0.53
VAPA-201ENST00000340541 STK11IPQ8N1F8 1099 aa18.36■□□□□ 0.53
VAPA-201ENST00000340541 FEZ1Q99689 392 aa18.36■□□□□ 0.53
VAPA-201ENST00000340541 MORF4L1Q9UBU8 362 aa18.36■□□□□ 0.53
VAPA-201ENST00000340541 NR2E3Q9Y5X4 410 aa18.36■□□□□ 0.53
VAPA-201ENST00000340541 CCDC171Q6TFL3 1326 aa18.35■□□□□ 0.53
VAPA-201ENST00000340541 PPARAQ07869 468 aa18.35■□□□□ 0.53
VAPA-201ENST00000340541 ALX1Q15699 326 aa18.35■□□□□ 0.53
VAPA-201ENST00000340541 PAK6Q9NQU5 681 aaPredicted RBP18.35■□□□□ 0.53
VAPA-201ENST00000340541 CEP290O15078 2479 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 PRDM1O75626 825 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 FARP2O94887 1054 aaPredicted RBP18.34■□□□□ 0.53
VAPA-201ENST00000340541 TFRCP02786 760 aaKnown RBP18.34■□□□□ 0.53
VAPA-201ENST00000340541 HSPD1P10809 573 aaKnown RBP18.34■□□□□ 0.53
VAPA-201ENST00000340541 ELNP15502 786 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 VCAM1P19320 739 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 USP14P54578 494 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 ICA1Q05084 483 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 KIAA1755Q5JYT7 1200 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 POTEEQ6S8J3 1075 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 P2RX7Q99572 595 aaKnown RBP18.34■□□□□ 0.53
VAPA-201ENST00000340541 CRISPLD2Q9H0B8 497 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 GJD2Q9UKL4 321 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 TMX2Q9Y320 296 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 TACC3Q9Y6A5 838 aa18.34■□□□□ 0.53
VAPA-201ENST00000340541 FGAP02671 866 aa18.33■□□□□ 0.52
VAPA-201ENST00000340541 CWC27Q6UX04 472 aaKnown RBP18.33■□□□□ 0.52
VAPA-201ENST00000340541 CENPQQ7L2Z9 268 aaPredicted RBP18.33■□□□□ 0.52
VAPA-201ENST00000340541 KANSL2Q9H9L4 492 aa18.33■□□□□ 0.52
VAPA-201ENST00000340541 MKNK2Q9HBH9 465 aa18.33■□□□□ 0.52
VAPA-201ENST00000340541 ANAPC4Q9UJX5 808 aa18.33■□□□□ 0.52
VAPA-201ENST00000340541 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.33■□□□□ 0.52
VAPA-201ENST00000340541 DOCK3Q8IZD9 2030 aa18.33■□□□□ 0.52
VAPA-201ENST00000340541 ZMYM6O95789 1325 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 RLFQ13129 1914 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 IGKV6D-41A0A0C4DH26 115 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 HIP1O00291 1037 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 EEF2P13639 858 aaKnown RBP18.32■□□□□ 0.52
VAPA-201ENST00000340541 HERVK_113P62684 666 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 IRX3P78415 501 aaPredicted RBP18.32■□□□□ 0.52
VAPA-201ENST00000340541 GTF3C2Q8WUA4 911 aaPredicted RBP18.32■□□□□ 0.52
VAPA-201ENST00000340541 IL25Q9H293 177 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 DIAPH3Q9NSV4 1193 aa18.32■□□□□ 0.52
VAPA-201ENST00000340541 USP17L15C9J2P7 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L13C9JLJ4 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L11C9JVI0 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L18D6R9N7 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L22D6RA61 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L17D6RBQ6 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L19D6RCP7 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L20D6RJB6 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 PEX10O60683 326 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 HMGCRP04035 888 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 CTDSPL2Q05D32 466 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 USP17L24Q0WX57 530 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 CATSPERGQ6ZRH7 1159 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 ANKLE1Q8NAG6 615 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 DEFB118Q96PH6 123 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 ZNF287Q9HBT7 754 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 ARHGEF10LQ9HCE6 1279 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 TXNRD2Q9NNW7 524 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 INCENPQ9NQS7 918 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 RBPJLQ9UBG7 517 aa18.31■□□□□ 0.52
VAPA-201ENST00000340541 PLIN4Q96Q06 1357 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 RPTORQ8N122 1335 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 FGRP09769 529 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 XRCC5P13010 732 aaKnown RBP18.3■□□□□ 0.52
VAPA-201ENST00000340541 PDE4BQ07343 736 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 SKAP1Q86WV1 359 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 TRMT44Q8IYL2 757 aaKnown RBP18.3■□□□□ 0.52
VAPA-201ENST00000340541 GPRC5AQ8NFJ5 357 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 RPAP3Q9H6T3 665 aaPredicted RBP18.3■□□□□ 0.52
VAPA-201ENST00000340541 VCPKMTQ9H867 229 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 PARP14Q460N5 1801 aa18.3■□□□□ 0.52
VAPA-201ENST00000340541 SLC3A2P08195 630 aaKnown RBP18.29■□□□□ 0.52
VAPA-201ENST00000340541 MFAP1P55081 439 aaKnown RBP18.29■□□□□ 0.52
VAPA-201ENST00000340541 CHRDL2Q6WN34 429 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 ZNF444Q8N0Y2 327 aaPredicted RBP18.29■□□□□ 0.52
VAPA-201ENST00000340541 NEDD1Q8NHV4 660 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 LPAR1Q92633 364 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 NBPF3Q9H094 633 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.29■□□□□ 0.523e-10■■■■■ 28.4
VAPA-201ENST00000340541 SH2D4AQ9H788 454 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 HMX1Q9NP08 348 aaPredicted RBP18.29■□□□□ 0.52
VAPA-201ENST00000340541 NYAP2Q9P242 653 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 MYH4Q9Y623 1939 aa18.29■□□□□ 0.52
VAPA-201ENST00000340541 LAMA4Q16363 1823 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 EVI5O60447 810 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 MAPK4P31152 587 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 FAM47AQ5JRC9 791 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 LBX2Q6XYB7 198 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 NECAB2Q7Z6G3 386 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 SPICE1Q8N0Z3 855 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 SOCS4Q8WXH5 440 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 CEP95Q96GE4 821 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 NUDT12Q9BQG2 462 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms