RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DEPTORQ8TB45 409 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 TMEM87BQ96K49 555 aa13.96□□□□□ -0.18
SDC3-201ENST00000336798 CAPN9O14815 690 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 DLGAP5Q15398 846 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 SFMBT2Q5VUG0 894 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 PLBD2Q8NHP8 589 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 FLT4P35916 1363 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 RPS6KA2Q15349 733 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 GABPB2Q8TAK5 448 aaPredicted RBP13.95□□□□□ -0.18
SDC3-201ENST00000336798 SNX14Q9Y5W7 946 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 RALGAPBQ86X10 1494 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 BCRP11274 1271 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 ALAS1P13196 640 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 DOK7Q18PE1 504 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 SCYL1Q96KG9 808 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 MAGED2Q9UNF1 606 aaPredicted RBP13.95□□□□□ -0.18
SDC3-201ENST00000336798 THRAP3Q9Y2W1 955 aaKnown RBP13.95□□□□□ -0.18
SDC3-201ENST00000336798 ZNF202O95125 648 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 ELF2Q15723 593 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 MIER3Q7Z3K6 550 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 CHMP6Q96FZ7 201 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 ZNF790Q6PG37 636 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 SRGAP1Q7Z6B7 1085 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 LGR6Q9HBX8 967 aa13.95□□□□□ -0.18
SDC3-201ENST00000336798 DKC1O60832 514 aaKnown RBP eCLIP13.94□□□□□ -0.18
SDC3-201ENST00000336798 PALM2Q8IXS6 379 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 UHMK1Q8TAS1 419 aaKnown RBP13.94□□□□□ -0.18
SDC3-201ENST00000336798 SUGCTQ9HAC7 445 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 NLRX1Q86UT6 975 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 METTL22Q9BUU2 404 aaPredicted RBP13.94□□□□□ -0.18
SDC3-201ENST00000336798 ASXL1Q8IXJ9 1541 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 JAK2O60674 1132 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 RIMS2Q9UQ26 1411 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 GAS7O60861 476 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 TRIM14Q14142 442 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 POSTNQ15063 836 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 KAZNQ674X7 775 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 CBX8Q9HC52 389 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 TTF2Q9UNY4 1162 aaKnown RBP13.94□□□□□ -0.18
SDC3-201ENST00000336798 TECP42680 631 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 ADKP55263 362 aaKnown RBP13.94□□□□□ -0.18
SDC3-201ENST00000336798 GABPB1Q06547 395 aaPredicted RBP13.94□□□□□ -0.18
SDC3-201ENST00000336798 TAOK1Q7L7X3 1001 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 TRIM50Q86XT4 487 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 SUCLG2Q96I99 432 aa13.94□□□□□ -0.18
SDC3-201ENST00000336798 TACO1Q9BSH4 297 aaKnown RBP13.94□□□□□ -0.18
SDC3-201ENST00000336798 RPS6KA1Q15418 735 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 NCAPG2Q86XI2 1143 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 POMGNT1Q8WZA1 660 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 APPBP2Q92624 585 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 DDX27Q96GQ7 796 aaKnown RBP13.93□□□□□ -0.18
SDC3-201ENST00000336798 KRT12Q99456 494 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 BUB1O43683 1085 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 GOLGA8HP0CJ92 632 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 IL1RL1Q01638 556 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 RBBP5Q15291 538 aaKnown RBP13.93□□□□□ -0.18
SDC3-201ENST00000336798 PRR16Q569H4 304 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 LMNTD2Q8IXW0 634 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 CD2APQ9Y5K6 639 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 GADD45BO75293 160 aaPredicted RBP13.93□□□□□ -0.18
SDC3-201ENST00000336798 SLC4A1P02730 911 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 ATF7P17544 494 aaPredicted RBP13.93□□□□□ -0.18
SDC3-201ENST00000336798 Q3C1V9 767 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 CDC37L1Q7L3B6 337 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 LRRC47Q8N1G4 583 aaKnown RBP13.93□□□□□ -0.18
SDC3-201ENST00000336798 FAM193BQ96PV7 902 aaPredicted RBP13.93□□□□□ -0.18
SDC3-201ENST00000336798 MAST3O60307 1309 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 SMCO2A6NFE2 343 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 COBLO75128 1261 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 TUBB4AP04350 444 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 PLCB4Q15147 1175 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 KRT25Q7Z3Z0 450 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 NME8Q8N427 588 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 CUTAO60888 179 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 CASP2P42575 452 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 CEP128Q6ZU80 1094 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 C2CD5Q86YS7 1000 aa13.93□□□□□ -0.18
SDC3-201ENST00000336798 GOLGA6BA6NDN3 693 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 DLATP10515 647 aaKnown RBP13.92□□□□□ -0.18
SDC3-201ENST00000336798 SND1Q7KZF4 910 aaKnown RBP eCLIP13.92□□□□□ -0.18
SDC3-201ENST00000336798 GPBP1Q86WP2 473 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 RAD50Q92878 1312 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 KDRP35968 1356 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 NLRP12P59046 1061 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 KRT40Q6A162 431 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 NFE2L3Q9Y4A8 694 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 CSADQ9Y600 493 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 ARHGAP42A6NI28 874 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 GCKP35557 465 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 ABCF3Q9NUQ8 709 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 SERTAD1Q9UHV2 236 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 KIAA0586Q9BVV6 1533 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 ESYT2A0FGR8 921 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 STAM2O75886 525 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 GSTA1P08263 222 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 GSTA2P09210 222 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 PPP1R2P41236 205 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 FOXD4Q12950 439 aaPredicted RBP13.92□□□□□ -0.18
SDC3-201ENST00000336798 DENND2CQ68D51 928 aa13.92□□□□□ -0.18
SDC3-201ENST00000336798 ARHGAP27Q6ZUM4 889 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms