RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 H0YCG3 227 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 USO1O60763 962 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 KRT13P13646 458 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 CDR1P51861 262 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 SPA17Q15506 151 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 RBM46Q8TBY0 533 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 USP28Q96RU2 1077 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 TCHPQ9BT92 498 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 MYL10Q9BUA6 226 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 RTEL1Q9NZ71 1219 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 STK36Q9NRP7 1315 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 TGFB2P61812 414 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 C12orf60Q5U649 245 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 JAKMIP3Q5VZ66 844 aa7.74□□□□□ -1.17
SF3B1-201ENST00000335508 ARL6IP4Q66PJ3 421 aaKnown RBP7.74□□□□□ -1.17
SF3B1-201ENST00000335508 VWA3AA6NCI4 1184 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 TMEM232C9JQI7 657 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 FGFR2P21802 821 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 SEMA3FQ13275 785 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 PIK3AP1Q6ZUJ8 805 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 SYCP3Q8IZU3 236 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 CCDC150Q8NCX0 1101 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 DHX58Q96C10 678 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 WDR11Q9BZH6 1224 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 IMPG2Q9BZV3 1241 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 SERPINA10Q9UK55 444 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 CETN3O15182 167 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 IREB2P48200 963 aaKnown RBP7.73□□□□□ -1.17
SF3B1-201ENST00000335508 ZNF445P59923 1031 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 FAM173BQ6P4H8 233 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 EHBP1Q8NDI1 1231 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 JPH2Q9BR39 696 aaPredicted RBP7.73□□□□□ -1.17
SF3B1-201ENST00000335508 ARHGEF28Q8N1W1 1705 aaKnown RBP7.73□□□□□ -1.17
SF3B1-201ENST00000335508 PRKAB2O43741 272 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 PPP2R3AQ06190 1150 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 UBN2Q6ZU65 1347 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 FLOT1O75955 427 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 CRKP46108 304 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 CDK8P49336 464 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 SMTNP53814 917 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 IQCEQ6IPM2 695 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 APOBEC3FQ8IUX4 373 aaKnown RBP7.73□□□□□ -1.17
SF3B1-201ENST00000335508 MB21D2Q8IYB1 491 aaPredicted RBP7.73□□□□□ -1.17
SF3B1-201ENST00000335508 FAM151AQ8WW52 585 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 ERCC4Q92889 916 aaPredicted RBP7.73□□□□□ -1.17
SF3B1-201ENST00000335508 KIF4AO95239 1232 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 AP3B2Q13367 1082 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 SCARF1Q14162 830 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 SNX29Q8TEQ0 813 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 MAP3K14Q99558 947 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 CLSTN2Q9H4D0 955 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 VPS54Q9P1Q0 977 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 DAGLAQ9Y4D2 1042 aa7.73□□□□□ -1.17
SF3B1-201ENST00000335508 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.73□□□□□ -1.172e-7■□□□□ 11.2
SF3B1-201ENST00000335508 MCM7P33993 719 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 COPB2P35606 906 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 DYNLL1P63167 89 aaKnown RBP7.72□□□□□ -1.17
SF3B1-201ENST00000335508 KCTD2Q14681 263 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 C15orf52Q6ZUT6 534 aaKnown RBP7.72□□□□□ -1.17
SF3B1-201ENST00000335508 TMTC3Q6ZXV5 915 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 ZNF592Q92610 1267 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 GSDMAQ96QA5 445 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 KDM3AQ9Y4C1 1321 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 CAMTA1Q9Y6Y1 1673 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 FKBP1CQ5VVH2 108 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 CNNM4Q6P4Q7 775 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 BEGAINQ9BUH8 593 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 MRIQ9BWK5 157 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 NYAP2Q9P242 653 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 DNM3Q9UQ16 869 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 LONP1P36776 959 aaKnown RBP7.72□□□□□ -1.17
SF3B1-201ENST00000335508 PRPF38AQ8NAV1 312 aaKnown RBP7.72□□□□□ -1.17
SF3B1-201ENST00000335508 SLC4A9Q96Q91 983 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 MAP7D2Q96T17 732 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 PCDHA12Q9UN75 941 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 SALL3Q9BXA9 1300 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 GCOM1H8Y6P7 765 aaPredicted RBP7.72□□□□□ -1.17
SF3B1-201ENST00000335508 OR52Z1P0C646 297 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 POLR2MP0CAP2 368 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 SMARCA1P28370 1054 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 DEFB132Q7Z7B7 95 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 SPC25Q9HBM1 224 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 ZSCAN23Q3MJ62 389 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 ARMC9Q7Z3E5 817 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 PLVAPQ9BX97 442 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 PNMA3Q9UL41 463 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 ABCC6O95255 1503 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 PXDNQ92626 1479 aa7.72□□□□□ -1.17
SF3B1-201ENST00000335508 ARHGEF35A5YM69 484 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 ECE2O60344 883 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 FAM13AO94988 1023 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 AFMP43652 599 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 KIF23Q02241 960 aaPredicted RBP7.71□□□□□ -1.17
SF3B1-201ENST00000335508 PLS1Q14651 629 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 HSP90B2PQ58FF3 399 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 PPP1R18Q6NYC8 613 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 SLFN12Q8IYM2 578 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 KIF18AQ8NI77 898 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 TIGD1Q96MW7 591 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 ZNF202O95125 648 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 867.5 ms