RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.61■□□□□ 0.25
LIMS1-201ENST00000332345 TSPY2A6NKD2 308 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 RANBP6O60518 1105 aaKnown RBP16.6■□□□□ 0.25
LIMS1-201ENST00000332345 FMNL1O95466 1100 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-201ENST00000332345 HOXD10P28358 340 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 PSMC4P43686 418 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 HAND2P61296 217 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 HERVK_113P62684 666 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 FBXO46Q6PJ61 603 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-201ENST00000332345 MFSD6Q6ZSS7 791 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 CLEC10AQ8IUN9 316 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 MKL1Q969V6 931 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 RPAP3Q9H6T3 665 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-201ENST00000332345 INCENPQ9NQS7 918 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 TOMM22Q9NS69 142 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 MTMR4Q9NYA4 1195 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 HOXC10Q9NYD6 342 aa16.6■□□□□ 0.25
LIMS1-201ENST00000332345 IGKV6D-41A0A0C4DH26 115 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 TTLL1O95922 423 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 COG2Q14746 738 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 IMMTQ16891 758 aaKnown RBP16.59■□□□□ 0.25
LIMS1-201ENST00000332345 FAM110CQ1W6H9 321 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 AKNAD1Q5T1N1 836 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 SKAP1Q86WV1 359 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 CEP95Q96GE4 821 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 ABHD8Q96I13 439 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 FOXD4L1Q9NU39 408 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 SYNPO2Q9UMS6 1093 aa16.59■□□□□ 0.25
LIMS1-201ENST00000332345 SGSM2O43147 1006 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 RAD21O60216 631 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 NT5C2P49902 561 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 PRMT2P55345 433 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 FCGRTP55899 365 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 RRP12Q5JTH9 1297 aaKnown RBP16.58■□□□□ 0.24
LIMS1-201ENST00000332345 SPICE1Q8N0Z3 855 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 GPRC5AQ8NFJ5 357 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 STAG1Q8WVM7 1258 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 TANGO6Q9C0B7 1094 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 PTPN22Q9Y2R2 807 aa16.58■□□□□ 0.24
LIMS1-201ENST00000332345 GREB1LQ9C091 1923 aaPredicted RBP16.57■□□□□ 0.24
LIMS1-201ENST00000332345 PLIN4Q96Q06 1357 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 WDR46O15213 610 aaKnown RBP16.57■□□□□ 0.24
LIMS1-201ENST00000332345 CASC1Q6TDU7 716 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 KIAA1211Q6ZU35 1233 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 TRIM47Q96LD4 638 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 ARHGAP39Q9C0H5 1083 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 IL25Q9H293 177 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 RBPJLQ9UBG7 517 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 MORF4L1Q9UBU8 362 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 MYH4Q9Y623 1939 aa16.57■□□□□ 0.24
LIMS1-201ENST00000332345 F5H6K3 240 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 ECM2O94769 699 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-201ENST00000332345 KLRC3Q07444 240 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 KIAA1755Q5JYT7 1200 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 LBX2Q6XYB7 198 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 ESR2Q92731 530 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 TCP11L1Q9NUJ3 509 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 RABGAP1Q9Y3P9 1069 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 TACC3Q9Y6A5 838 aa16.56■□□□□ 0.24
LIMS1-201ENST00000332345 U3KPZ7 1027 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-201ENST00000332345 MGAMO43451 1857 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 FLOT1O75955 427 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 CAP1Q01518 475 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 CCAR1Q8IX12 1150 aaKnown RBP16.55■□□□□ 0.24
LIMS1-201ENST00000332345 COA7Q96BR5 231 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 PAGR1Q9BTK6 254 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 NBPF3Q9H094 633 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 IL17RBQ9NRM6 502 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 SRRDQ9UH36 339 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 STX8Q9UNK0 236 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 HPS5Q9UPZ3 1129 aa16.55■□□□□ 0.24
LIMS1-201ENST00000332345 TNPO2O14787 897 aaKnown RBP16.54■□□□□ 0.24
LIMS1-201ENST00000332345 CTGFP29279 349 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 DSG3P32926 999 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 ERVK-9P63128 1117 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 ERVK-24P63145 666 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 CCNA1P78396 465 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 PTH1RQ03431 593 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 CCDC178Q5BJE1 867 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 IFFO2Q5TF58 517 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 TBC1D10CQ8IV04 446 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 MB21D1Q8N884 522 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 GMCL1P1Q8NEA9 526 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 ESYT1Q9BSJ8 1104 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 CNNM2Q9H8M5 875 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 TXNRD2Q9NNW7 524 aa16.54■□□□□ 0.24
LIMS1-201ENST00000332345 MYPNQ86TC9 1320 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 CCDC85CA6NKD9 419 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 SPDYE16A6NNV3 312 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-201ENST00000332345 NDUFB10O96000 172 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 MAPK4P31152 587 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 Q3C1V9 767 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 FAM83BQ5T0W9 1011 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 NBPF11Q86T75 865 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 IQCA1Q86XH1 822 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 RAET1EQ8TD07 263 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 MAP4K1Q92918 833 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 TTC14Q96N46 770 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 KRT23Q9C075 422 aa16.53■□□□□ 0.24
LIMS1-201ENST00000332345 DOCK3Q8IZD9 2030 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms