RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 GJB2P29033 226 aa11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 NF2P35240 595 aa11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 ADD1P35611 737 aaKnown RBP11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 HMGN5P82970 282 aaKnown RBP11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 ATP2B2Q01814 1243 aa11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 SIAH1Q8IUQ4 282 aa11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 KLRG1Q96E93 195 aa11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 CIZ1Q9ULV3 898 aaPredicted RBP11.94□□□□□ -0.5
VIPAS39-201ENST00000327028 INPP5BP32019 993 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 NTRK3Q16288 839 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 NOL9Q5SY16 702 aaKnown RBP11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 DLK2Q6UY11 383 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 TMTC3Q6ZXV5 915 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 SCYL3Q8IZE3 742 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 ARHGEF10LQ9HCE6 1279 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 SNHG28P0DPA3 235 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 IFNAR1P17181 557 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 GMCL1P1Q8NEA9 526 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 STK36Q9NRP7 1315 aa11.93□□□□□ -0.5
VIPAS39-201ENST00000327028 PPP1R12BO60237 982 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 USP2O75604 605 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 PDHBP11177 359 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 MAP1SQ66K74 1059 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 ZNF526Q8TF50 670 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 SH2D4AQ9H788 454 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 MAD2L2Q9UI95 211 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 PHIPQ8WWQ0 1821 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 GNAQP50148 359 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 CHMP5Q9NZZ3 219 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 FZD1Q9UP38 647 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 TMX2Q9Y320 296 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 KIF3AQ9Y496 699 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 MYH6P13533 1939 aa11.92□□□□□ -0.5
VIPAS39-201ENST00000327028 PALM3A6NDB9 673 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 PLEKHA8P1O95397 391 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 PARP1P09874 1014 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 IREB2P48200 963 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 ASPRV1Q53RT3 343 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 RASGRP2Q7LDG7 609 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 NBPF11Q86T75 865 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 DCAF4Q8WV16 495 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 PICK1Q9NRD5 415 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 A0A1W2PRG0 241 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 USP17L5A8MUK1 530 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 DTNBO60941 627 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 FMNL1O95466 1100 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 FUT2Q10981 343 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 PRKG1Q13976 671 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 ACER1Q8TDN7 264 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 ZKSCAN4Q969J2 545 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 DDX11Q96FC9 970 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 LZTS2Q9BRK4 669 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 ORC3Q9UBD5 711 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 MTMR7Q9Y216 660 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 CNTNAP5Q8WYK1 1306 aa11.91□□□□□ -0.5
VIPAS39-201ENST00000327028 PDCP20941 246 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 MAP3K9P80192 1104 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 SSRP1Q08945 709 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 ZNF543Q08ER8 600 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 MAP3K11Q16584 847 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 TRIM22Q8IYM9 498 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 STAG2Q8N3U4 1231 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 FAM184AQ8NB25 1140 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 PHKBQ93100 1093 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 GMCL1Q96IK5 515 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 GOPCQ9HD26 462 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 F5H6K3 240 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 NDUFB10O96000 172 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 FDPSP14324 419 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 ECE1P42892 770 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 KLRC3Q07444 240 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 GPATCH4Q5T3I0 446 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 SLFN13Q68D06 897 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 USP17L2Q6R6M4 530 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 CCDC84Q86UT8 332 aaPredicted RBP11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 SRBD1Q8N5C6 995 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 WDR18Q9BV38 432 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 SLC26A6Q9BXS9 759 aa11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 RNF26Q9BY78 433 aaPredicted RBP11.9□□□□□ -0.5
VIPAS39-201ENST00000327028 TRAF5O00463 557 aa11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 PTPRAP18433 802 aa11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 NUCB2P80303 420 aa11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 CMTR1Q8N1G2 835 aaKnown RBP11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 VCPKMTQ9H867 229 aa11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 AS3MTQ9HBK9 375 aa11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 SNCAIPQ9Y6H5 919 aa11.9□□□□□ -0.51
VIPAS39-201ENST00000327028 KLRF2D3W0D1 207 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 PPFIA3O75145 1194 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 GOLGA8HP0CJ92 632 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 PDIA4P13667 645 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 SMARCA1P28370 1054 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 VGLL4Q14135 290 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 CCDC96Q2M329 555 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 FRMPD2Q68DX3 1309 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 CHADLQ6NUI6 762 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 ARMC9Q7Z3E5 817 aa11.89□□□□□ -0.51
VIPAS39-201ENST00000327028 FEZ1Q99689 392 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms