RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 NCAPGQ9BPX3 1015 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 YY1AP1Q9H869 796 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 GEMIN8Q9NWZ8 242 aaKnown RBP10.89□□□□□ -0.67
PTPRA-202ENST00000318266 ZSWIM5Q9P217 1185 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 CDHR2Q9BYE9 1310 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 PBX1P40424 430 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 C2orf54Q08AI8 447 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 CUL4BQ13620 913 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 RRAGBQ5VZM2 374 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 MMS22LQ6ZRQ5 1243 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 IGDCC4Q8TDY8 1250 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 COG1Q8WTW3 980 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 SYMPKQ92797 1274 aaKnown RBP10.89□□□□□ -0.67
PTPRA-202ENST00000318266 PSMB7Q99436 277 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 SELENOOQ9BVL4 669 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 BRMS1Q9HCU9 246 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 GNL3LQ9NVN8 582 aaKnown RBP10.89□□□□□ -0.67
PTPRA-202ENST00000318266 FAM169AQ9Y6X4 670 aa10.89□□□□□ -0.67
PTPRA-202ENST00000318266 NBPF26B4DH59 902 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 UBXN1Q04323 297 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 RILPL1Q5EBL4 403 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 NBPF14Q5TI25 921 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 WDR93Q6P2C0 686 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 NBPF10Q6P3W6 841 aaKnown RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 TRIM22Q8IYM9 498 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 NBPF15Q8N660 670 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 TRIML1Q8N9V2 468 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 PAGE5Q96GU1 130 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 GPR108Q9NPR9 543 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 REXO2Q9Y3B8 237 aaKnown RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 EPN1Q9Y6I3 576 aaPredicted RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 SPATA31A3Q5VYP0 1347 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 A0A087WUV0 522 aaPredicted RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 MACROD2A1Z1Q3 448 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 EBAG9O00559 213 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 PRDM1O75626 825 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 NDUFA10O95299 355 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 CSB-PGBD3P0DP91 1061 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 MCAMP43121 646 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 CDKAL1Q5VV42 579 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 CTAGE1Q96RT6 745 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 JADE2Q9NQC1 790 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 VPS54Q9P1Q0 977 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 SAR1BQ9Y6B6 198 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 GOLGA6BA6NDN3 693 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 WNT7AO00755 349 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 PHKG2P15735 406 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 IRAK1P51617 712 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 PPARAQ07869 468 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 TUBB2AQ13885 445 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 MAP9Q49MG5 647 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 KIAA1328Q86T90 577 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 CTCFLQ8NI51 663 aaPredicted RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 RRP36Q96EU6 259 aaKnown RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 TUBB2BQ9BVA1 445 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 SRPRBQ9Y5M8 271 aaKnown RBP10.88□□□□□ -0.67
PTPRA-202ENST00000318266 DUSP10Q9Y6W6 482 aa10.88□□□□□ -0.67
PTPRA-202ENST00000318266 ZNF532Q9HCE3 1301 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 PPP1R3GB7ZBB8 358 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 AGPSO00116 658 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 GNGT1P63211 74 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 ZNF174Q15697 407 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 EZH2Q15910 746 aaKnown RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 EARS2Q5JPH6 523 aaKnown RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 MCTP2Q6DN12 878 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 KANK3Q6NY19 840 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 SND1Q7KZF4 910 aaKnown RBP eCLIP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 JAKMIP2Q96AA8 810 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 FAM89AQ96GI7 184 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.87□□□□□ -0.671e-6■■□□□ 11.8
PTPRA-202ENST00000318266 FMNL1O95466 1100 aaPredicted RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 COPB1P53618 953 aaKnown RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 EIF5P55010 431 aaKnown RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 RTN1Q16799 776 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 TRAPPC11Q7Z392 1133 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 SYNE4Q8N205 404 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 AIDAQ96BJ3 306 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 PIH1D3Q9NQM4 214 aaKnown RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 TRPM3Q9HCF6 1732 aaPredicted RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 ALS2Q96Q42 1657 aa10.87□□□□□ -0.67
PTPRA-202ENST00000318266 KDM6AO15550 1401 aaPredicted RBP10.87□□□□□ -0.67
PTPRA-202ENST00000318266 TTC26A0AVF1 554 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 PDE2AO00408 941 aaPredicted RBP10.86□□□□□ -0.67
PTPRA-202ENST00000318266 CABP4P57796 275 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 SLC7A5Q01650 507 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 METTL24Q5JXM2 366 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 HDAC7Q8WUI4 952 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 DDX17Q92841 729 aaKnown RBP10.86□□□□□ -0.67
PTPRA-202ENST00000318266 STRN4Q9NRL3 753 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 LMO7Q8WWI1 1683 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 ZC3H4Q9UPT8 1303 aaKnown RBP10.86□□□□□ -0.67
PTPRA-202ENST00000318266 TRIM49BA6NDI0 452 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 DCAF8L1A6NGE4 600 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 AARSP49588 968 aaKnown RBP eCLIP10.86□□□□□ -0.67
PTPRA-202ENST00000318266 ATP1A2P50993 1020 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 CYP27A1Q02318 531 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 KCTD16Q68DU8 428 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 MSL3Q8N5Y2 521 aaKnown RBP10.86□□□□□ -0.67
PTPRA-202ENST00000318266 SPATA20Q8TB22 786 aa10.86□□□□□ -0.67
PTPRA-202ENST00000318266 TMEM87BQ96K49 555 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms