RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 CPVLQ9H3G5 476 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 HPS5Q9UPZ3 1129 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 CSADQ9Y600 493 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 GREB1LQ9C091 1923 aaPredicted RBP18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 ADD1P35611 737 aaKnown RBP18■□□□□ 0.47
PDLIM5-202ENST00000318007 USP17L2Q6R6M4 530 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 PIBF1Q8WXW3 757 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 ZNF112Q9UJU3 913 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 TOP1P11387 765 aaKnown RBP18■□□□□ 0.47
PDLIM5-202ENST00000318007 PTPRAP18433 802 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 CDC27P30260 824 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 MCM2P49736 904 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 MAP3K9P80192 1104 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 DOCK1Q14185 1865 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 CST9Q5W186 159 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 OTUD5Q96G74 571 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 ALDH8A1Q9H2A2 487 aaPredicted RBP18■□□□□ 0.47
PDLIM5-202ENST00000318007 GBA2Q9HCG7 927 aaPredicted RBP18■□□□□ 0.47
PDLIM5-202ENST00000318007 SNCAIPQ9Y6H5 919 aa18■□□□□ 0.47
PDLIM5-202ENST00000318007 USP17L5A8MUK1 530 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 SPP2Q13103 211 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 MTMR2Q13614 643 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 ARMC9Q7Z3E5 817 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 TROAPQ12815 778 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 KCTD1Q719H9 257 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 TMTC2Q8N394 836 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 STAG2Q8N3U4 1231 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 ARHGEF10LQ9HCE6 1279 aa17.99■□□□□ 0.47
PDLIM5-202ENST00000318007 hCG_1642624A0A1W2PR95 340 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 CCDC96Q2M329 555 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 KIAA1755Q5JYT7 1200 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 ANKRD13AQ8IZ07 590 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 FBXL16Q8N461 479 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 PHKBQ93100 1093 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 GTF3C6Q969F1 213 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 DDX11Q96FC9 970 aa17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 IPO9Q96P70 1041 aaKnown RBP17.98■□□□□ 0.47
PDLIM5-202ENST00000318007 JAK2O60674 1132 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 PLEKHA8P1O95397 391 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 FOSBP53539 338 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 RTN1Q16799 776 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 CCDC178Q5BJE1 867 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 C2orf69Q8N8R5 385 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 SMC1BQ8NDV3 1235 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 ZNF274Q96GC6 653 aaPredicted RBP17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 GPCPD1Q9NPB8 672 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 NYAP2Q9P242 653 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 F5H6K3 240 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 CPLX1O14810 134 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 KLRC3Q07444 240 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 GRM1Q13255 1194 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 FANCBQ8NB91 859 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 MTA3Q9BTC8 594 aa17.97■□□□□ 0.47
PDLIM5-202ENST00000318007 CEP350Q5VT06 3117 aa17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 PFKFB2O60825 505 aa17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 TOMM70O94826 608 aa17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 PDHBP11177 359 aa17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 HMGCS2P54868 508 aa17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 CTCFLQ8NI51 663 aaPredicted RBP17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 ZSCAN31Q96LW9 406 aaPredicted RBP17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 SH2B1Q9NRF2 756 aaPredicted RBP17.96■□□□□ 0.47
PDLIM5-202ENST00000318007 NDUFB10O96000 172 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 SLC16A2P36021 539 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 SLC1A4P43007 532 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 EVCP57679 992 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 IKQ13123 557 aaPredicted RBP17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 SLFN13Q68D06 897 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 NBPF11Q86T75 865 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 OPTNQ96CV9 577 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 UBA5Q9GZZ9 404 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 FAM217BQ9NTX9 383 aaPredicted RBP17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 IRF6O14896 467 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 DHX16O60231 1041 aaKnown RBP17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 DDAH1O94760 285 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 NOVP48745 357 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 NT5C2P49902 561 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 HUNKP57058 714 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 TTBK2Q6IQ55 1244 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 ZNF280CQ8ND82 737 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 ANKS1AQ92625 1134 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 VAT1LQ9HCJ6 419 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 MAD2L2Q9UI95 211 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 TMX2Q9Y320 296 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 PAPPA2Q9BXP8 1791 aa17.95■□□□□ 0.46
PDLIM5-202ENST00000318007 USP17L10C9JJH3 530 aa17.94■□□□□ 0.46
PDLIM5-202ENST00000318007 CTDNEP1O95476 244 aa17.94■□□□□ 0.46
PDLIM5-202ENST00000318007 PARP1P09874 1014 aaKnown RBP17.94■□□□□ 0.46
PDLIM5-202ENST00000318007 FAM83BQ5T0W9 1011 aa17.94■□□□□ 0.46
PDLIM5-202ENST00000318007 SLC10A4Q96EP9 437 aa17.94■□□□□ 0.46
PDLIM5-202ENST00000318007 NOL9Q5SY16 702 aaKnown RBP17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 GOPCQ9HD26 462 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 ABT1Q9ULW3 272 aaKnown RBP17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 BAZ2BQ9UIF8 2168 aaKnown RBP17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 PASKQ96RG2 1323 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 PTPDC1A2A3K4 754 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 MAP3K11Q16584 847 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 HOMER1Q86YM7 354 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 MKL1Q969V6 931 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 AS3MTQ9HBK9 375 aa17.93■□□□□ 0.46
PDLIM5-202ENST00000318007 KLRF2D3W0D1 207 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms