RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 ATP5DP30049 168 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 AP1ARQ63HQ0 302 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 CCDC174Q6PII3 467 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 NEK11Q8NG66 645 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 MICAL1Q8TDZ2 1067 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 CRAMP1Q96RY5 1269 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 MRVI1Q9Y6F6 885 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 KIF1AQ12756 1690 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 GOLGA6BA6NDN3 693 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 ZBED4O75132 1171 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 BMP15O95972 392 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 TUBB2AQ13885 445 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 NLRP10Q86W26 655 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 TUBB2BQ9BVA1 445 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 KDRP35968 1356 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 EEF2P13639 858 aaKnown RBP9.13□□□□□ -0.95
VPS41-202ENST00000310301 VEGFAP15692 232 aaPredicted RBP9.13□□□□□ -0.95
VPS41-202ENST00000310301 ZNF131P52739 623 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 ASIC1P78348 528 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 FYB2Q5VWT5 728 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 C8orf74Q6P047 294 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 SP8Q8IXZ3 490 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS41-202ENST00000310301 TSC1Q92574 1164 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 PRKAG2Q9UGJ0 569 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 CAPN7Q9Y6W3 813 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 KCNQ3O43525 872 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 SEC24BO95487 1268 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 PLCB3Q01970 1234 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 CALCOCO2Q13137 446 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 WHAMMP3Q1A5X7 153 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 CCDC26Q8TAB7 109 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 PNMA3Q9UL41 463 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 NOD1Q9Y239 953 aa9.13□□□□□ -0.95
VPS41-202ENST00000310301 SUDS3Q9H7L9 328 aaPredicted RBP9.13□□□□□ -0.95
VPS41-202ENST00000310301 PABPN1LA6NDY0 278 aaKnown RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 E7EVH7 732 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 ZBTB43O43298 467 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 ERCC3P19447 782 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 PDE1AP54750 535 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 AK2P54819 239 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 NKX1-1Q15270 411 aaPredicted RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 TMCO4Q5TGY1 634 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 SYNCQ9H7C4 482 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS41-202ENST00000310301 RNF10Q8N5U6 811 aaKnown RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 LRRC45Q96CN5 670 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 TACO1Q9BSH4 297 aaKnown RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 ZNRF3Q9ULT6 936 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 NBPF7P0C2Y1 421 aaPredicted RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 DPEP1P16444 411 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 ZNF75DP51815 510 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 MYL5Q02045 173 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 KRT24Q2M2I5 525 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 CEP128Q6ZU80 1094 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 UPF1Q92900 1129 aaKnown RBP eCLIP9.12□□□□□ -0.955e-10■■■■□ 22.9
VPS41-202ENST00000310301 MCUR1Q96AQ8 359 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 NDC80O14777 642 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 UTP14CQ5TAP6 766 aaKnown RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 VSIG1Q86XK7 387 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 GBP5Q96PP8 586 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 DBNDD1Q9H9R9 158 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 PAG1Q9NWQ8 432 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 RABGAP1Q9Y3P9 1069 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 TXNDC9O14530 226 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 TAF5LO75529 589 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 ATP2A2P16615 1042 aaKnown RBP9.12□□□□□ -0.95
VPS41-202ENST00000310301 SF3A3Q12874 501 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS41-202ENST00000310301 MAGEB6Q8N7X4 407 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 MEIS3Q99687 375 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 JAG2Q9Y219 1238 aa9.12□□□□□ -0.95
VPS41-202ENST00000310301 CHRNDQ07001 517 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 DMTNQ08495 405 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 WTAPQ15007 396 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 BICDL2A1A5D9 508 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 PEX19P40855 299 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 MMP14P50281 582 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 TFCP2Q12800 502 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 IFT20Q8IY31 132 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 SSX2IPQ9Y2D8 614 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 CCT6AP40227 531 aaKnown RBP9.11□□□□□ -0.95
VPS41-202ENST00000310301 JAKMIP2Q96AA8 810 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 BICD1Q96G01 975 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 RNASE9P60153 205 aaKnown RBP9.11□□□□□ -0.95
VPS41-202ENST00000310301 UAP1Q16222 522 aaPredicted RBP9.11□□□□□ -0.95
VPS41-202ENST00000310301 C9orf131Q5VYM1 1079 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 TBC1D9BQ66K14 1250 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 TSPYL6Q8N831 410 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 SMC1BQ8NDV3 1235 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 INTS4Q96HW7 963 aaKnown RBP9.11□□□□□ -0.95
VPS41-202ENST00000310301 TCHPQ9BT92 498 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 MTUS1Q9ULD2 1270 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 STK38LQ9Y2H1 464 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 ATP6V0A2Q9Y487 856 aa9.11□□□□□ -0.95
VPS41-202ENST00000310301 USP14P54578 494 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 ZNF445P59923 1031 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 TRIM68Q6AZZ1 485 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 GADL1Q6ZQY3 521 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 KRT26Q7Z3Y9 468 aa9.1□□□□□ -0.95
VPS41-202ENST00000310301 CCDC170Q8IYT3 715 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms