RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 SEC24BO95487 1268 aa25.11■■□□□ 1.61
SMCO4-201ENST00000298966 ANP32AP39687 249 aaKnown RBP25.11■■□□□ 1.61
SMCO4-201ENST00000298966 WDR78Q5VTH9 848 aa25.11■■□□□ 1.61
SMCO4-201ENST00000298966 DDX20Q9UHI6 824 aaKnown RBP25.11■■□□□ 1.61
SMCO4-201ENST00000298966 PALD1Q9ULE6 856 aa25.11■■□□□ 1.61
SMCO4-201ENST00000298966 EPB41L2O43491 1005 aaKnown RBP25.1■■□□□ 1.61
SMCO4-201ENST00000298966 HLA-DOAP06340 250 aa25.1■■□□□ 1.61
SMCO4-201ENST00000298966 CNGA1P29973 690 aa25.1■■□□□ 1.61
SMCO4-201ENST00000298966 ATN1P54259 1190 aaPredicted RBP25.1■■□□□ 1.61
SMCO4-201ENST00000298966 LRRFIP1Q32MZ4 808 aaKnown RBP25.1■■□□□ 1.61
SMCO4-201ENST00000298966 LPAR1Q92633 364 aa25.1■■□□□ 1.61
SMCO4-201ENST00000298966 FEZ1Q99689 392 aa25.1■■□□□ 1.61
SMCO4-201ENST00000298966 BOLA2Q9H3K6 86 aa25.1■■□□□ 1.61
SMCO4-201ENST00000298966 SLC15A5A6NIM6 579 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L15C9J2P7 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L13C9JLJ4 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L11C9JVI0 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L18D6R9N7 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L22D6RA61 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L17D6RBQ6 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L19D6RCP7 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L20D6RJB6 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 REC8O95072 547 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 ATP2B2Q01814 1243 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 USP17L24Q0WX57 530 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 POTEEQ6S8J3 1075 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 RUFY2Q8WXA3 655 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 NDUFB9Q9Y6M9 179 aa25.09■■□□□ 1.61
SMCO4-201ENST00000298966 DNAH12Q6ZR08 3092 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 DNM1LO00429 736 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 PTPREP23469 700 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 CHMLP26374 656 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 C12orf42Q96LP6 360 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 SNRKQ9NRH2 765 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 FLRT1Q9NZU1 646 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 SAP30BPQ9UHR5 308 aaKnown RBP25.08■■□□□ 1.61
SMCO4-201ENST00000298966 IVNS1ABPQ9Y6Y0 642 aa25.08■■□□□ 1.61
SMCO4-201ENST00000298966 MYH7P12883 1935 aa25.08■■□□□ 1.6
SMCO4-201ENST00000298966 CNMDO75829 334 aa25.07■■□□□ 1.6
SMCO4-201ENST00000298966 GH2P01242 217 aa25.07■■□□□ 1.6
SMCO4-201ENST00000298966 RTP1P59025 263 aa25.07■■□□□ 1.6
SMCO4-201ENST00000298966 ZYXQ15942 572 aaKnown RBP25.07■■□□□ 1.6
SMCO4-201ENST00000298966 LTBP2Q14767 1821 aa25.07■■□□□ 1.6
SMCO4-201ENST00000298966 RAD50Q92878 1312 aa25.06■■□□□ 1.6
SMCO4-201ENST00000298966 LAMA2P24043 3122 aaKnown RBP25.06■■□□□ 1.6
SMCO4-201ENST00000298966 HOXC6P09630 235 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 USP14P54578 494 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 TTF1Q15361 905 aaPredicted RBP25.05■■□□□ 1.6
SMCO4-201ENST00000298966 ADGRA1Q86SQ6 560 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 CDX2Q99626 313 aaPredicted RBP25.05■■□□□ 1.6
SMCO4-201ENST00000298966 DIAPH3Q9NSV4 1193 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 PAG1Q9NWQ8 432 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 ATP11BQ9Y2G3 1177 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 MYH1P12882 1939 aa25.05■■□□□ 1.6
SMCO4-201ENST00000298966 GRB14Q14449 540 aa25.04■■□□□ 1.6
SMCO4-201ENST00000298966 CATSPERGQ6ZRH7 1159 aa25.04■■□□□ 1.6
SMCO4-201ENST00000298966 KBTBD3Q8NAB2 608 aa25.04■■□□□ 1.6
SMCO4-201ENST00000298966 TBC1D32Q96NH3 1257 aa25.04■■□□□ 1.6
SMCO4-201ENST00000298966 FSD1Q9BTV5 496 aa25.04■■□□□ 1.6
SMCO4-201ENST00000298966 MYO5AQ9Y4I1 1855 aaKnown RBP25.04■■□□□ 1.6
SMCO4-201ENST00000298966 IGSF3O75054 1194 aa25.03■■□□□ 1.6
SMCO4-201ENST00000298966 CYP2C19P33261 490 aa25.03■■□□□ 1.6
SMCO4-201ENST00000298966 MFAP1P55081 439 aaKnown RBP25.03■■□□□ 1.6
SMCO4-201ENST00000298966 ARRDC4Q8NCT1 418 aa25.03■■□□□ 1.6
SMCO4-201ENST00000298966 MAFAQ8NHW3 353 aaPredicted RBP25.03■■□□□ 1.6
SMCO4-201ENST00000298966 DNAJC2Q99543 621 aaKnown RBP25.03■■□□□ 1.6
SMCO4-201ENST00000298966 ESYT1Q9BSJ8 1104 aa25.03■■□□□ 1.6
SMCO4-201ENST00000298966 RLFQ13129 1914 aa25.03■■□□□ 1.6
SMCO4-201ENST00000298966 SHHQ15465 462 aa25.02■■□□□ 1.6
SMCO4-201ENST00000298966 NPLOC4Q8TAT6 608 aa25.02■■□□□ 1.6
SMCO4-201ENST00000298966 KIAA1683Q9H0B3 1180 aa25.02■■□□□ 1.6
SMCO4-201ENST00000298966 SEMA6BQ9H3T3 888 aa25.02■■□□□ 1.6
SMCO4-201ENST00000298966 KBTBD13C9JR72 458 aa25.01■■□□□ 1.59
SMCO4-201ENST00000298966 CYP2E1P05181 493 aaPredicted RBP25.01■■□□□ 1.59
SMCO4-201ENST00000298966 GJC2Q5T442 439 aaPredicted RBP25.01■■□□□ 1.59
SMCO4-201ENST00000298966 TATDN1Q6P1N9 297 aa25.01■■□□□ 1.59
SMCO4-201ENST00000298966 LBX2Q6XYB7 198 aa25.01■■□□□ 1.59
SMCO4-201ENST00000298966 TRPV1Q8NER1 839 aa25.01■■□□□ 1.59
SMCO4-201ENST00000298966 PRDM5Q9NQX1 630 aaPredicted RBP25.01■■□□□ 1.59
SMCO4-201ENST00000298966 BTBD7Q9P203 1132 aa25.01■■□□□ 1.59
SMCO4-201ENST00000298966 ZFYP08048 801 aaPredicted RBP25■■□□□ 1.59
SMCO4-201ENST00000298966 CYBAP13498 195 aa25■■□□□ 1.59
SMCO4-201ENST00000298966 VCAM1P19320 739 aa25■■□□□ 1.59
SMCO4-201ENST00000298966 DYNLL1P63167 89 aaKnown RBP25■■□□□ 1.59
SMCO4-201ENST00000298966 RAB3GAP1Q15042 981 aa25■■□□□ 1.59
SMCO4-201ENST00000298966 SLC39A5Q6ZMH5 540 aa25■■□□□ 1.59
SMCO4-201ENST00000298966 DPP9Q86TI2 863 aa25■■□□□ 1.59
SMCO4-201ENST00000298966 CYP7A1P22680 504 aa24.99■■□□□ 1.59
SMCO4-201ENST00000298966 USP5P45974 858 aa24.99■■□□□ 1.59
SMCO4-201ENST00000298966 C9orf50Q5SZB4 431 aa24.99■■□□□ 1.59
SMCO4-201ENST00000298966 ZSCAN25Q6NSZ9 544 aa24.99■■□□□ 1.59
SMCO4-201ENST00000298966 C22orf23Q9BZE7 217 aa24.99■■□□□ 1.59
SMCO4-201ENST00000298966 SERPINB13Q9UIV8 391 aa24.99■■□□□ 1.59
SMCO4-201ENST00000298966 TTC28Q96AY4 2481 aa24.98■■□□□ 1.59
SMCO4-201ENST00000298966 GOLIM4O00461 696 aa24.98■■□□□ 1.59
SMCO4-201ENST00000298966 SGSM2O43147 1006 aa24.98■■□□□ 1.59
SMCO4-201ENST00000298966 RBM25P49756 843 aaKnown RBP24.98■■□□□ 1.59
SMCO4-201ENST00000298966 SMAD3P84022 425 aaKnown RBP24.98■■□□□ 1.59
SMCO4-201ENST00000298966 ABCB5Q2M3G0 1257 aa24.98■■□□□ 1.59
SMCO4-201ENST00000298966 CERKLQ49MI3 558 aaPredicted RBP24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms