RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TGFBRAP1Q8WUH2 860 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 GPKOWQ92917 476 aaPredicted RBP eCLIP20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 PPP1R13BQ96KQ4 1090 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 TOP1P11387 765 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 MCM7P33993 719 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 KANK3Q6NY19 840 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 MLKLQ8NB16 471 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 MKNK2Q9HBH9 465 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 SAMSN1Q9NSI8 373 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 SAP30BPQ9UHR5 308 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 PFKFB3Q16875 520 aaPredicted RBP20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 MKRN1Q9UHC7 482 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 LAMB1P07942 1786 aa20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 KIAA1551Q9HCM1 1747 aa20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 NCBP1Q09161 790 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 KLHL10Q6JEL2 608 aa20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 WDR66Q8TBY9 1149 aa20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 PAGE5Q96GU1 130 aa20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 LRRC4BQ9NT99 713 aa20.93■□□□□ 0.94
SHKBP1-201ENST00000291842 MAPKAPK5Q8IW41 473 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 SMYD4Q8IYR2 804 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 PNMA1Q8ND90 353 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 SLFN14P0C7P3 912 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 PLCD1P51178 756 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 STX17P56962 302 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 SPATA20Q8TB22 786 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 RASGRP4Q8TDF6 673 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 FERMT2Q96AC1 680 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 LEMD3Q9Y2U8 911 aa20.92■□□□□ 0.94
SHKBP1-201ENST00000291842 GPSM2P81274 684 aa20.91■□□□□ 0.94
SHKBP1-201ENST00000291842 ENOX1Q8TC92 643 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-201ENST00000291842 ANKRD7Q92527 254 aa20.91■□□□□ 0.94
SHKBP1-201ENST00000291842 KCND1Q9NSA2 647 aa20.91■□□□□ 0.94
SHKBP1-201ENST00000291842 DACH1Q9UI36 760 aa20.91■□□□□ 0.94
SHKBP1-201ENST00000291842 XDHP47989 1333 aa20.91■□□□□ 0.94
SHKBP1-201ENST00000291842 NRDCO43847 1150 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 CD44P16070 742 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 ATP2C1P98194 919 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 PRR5LQ6MZQ0 368 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 PDCL2Q8N4E4 241 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 COBLO75128 1261 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 TSPY3P0CV98 308 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 TSPY8P0CW00 308 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 ZNF18P17022 549 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 KIF5BP33176 963 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 IL17AQ16552 155 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 ZNF804AQ7Z570 1209 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 TRIML1Q8N9V2 468 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 KIF18AQ8NI77 898 aa20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 RPGRQ92834 1020 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 V9GYY5 206 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-201ENST00000291842 CDC25AP30304 524 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 GLIPR1L2Q4G1C9 344 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 PPP4R3BQ5MIZ7 849 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 RASGRP2Q7LDG7 609 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 BLZF1Q9H2G9 400 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 STX8Q9UNK0 236 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 NHSQ6T4R5 1651 aa20.89■□□□□ 0.94
SHKBP1-201ENST00000291842 FAM205AQ6ZU69 1335 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 MAST2Q6P0Q8 1798 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 UFL1O94874 794 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 BMP15O95972 392 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 SYT10Q6XYQ8 523 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 SH3RF1Q7Z6J0 888 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 SBF2Q86WG5 1849 aa20.89■□□□□ 0.93
SHKBP1-201ENST00000291842 BAG3O95817 575 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 TYW1BQ6NUM6 668 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 UBE2Q2Q8WVN8 375 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 ZNF215Q9UL58 517 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 TAF1LQ8IZX4 1826 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 PSDA5PKW4 1024 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 MYO1BO43795 1136 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 ADKP55263 362 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 DGKHQ86XP1 1220 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 ZNF444Q8N0Y2 327 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 NOL10Q9BSC4 688 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 CPVLQ9H3G5 476 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 MAD2L2Q9UI95 211 aa20.88■□□□□ 0.93
SHKBP1-201ENST00000291842 GOLGA8HP0CJ92 632 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 DPYDQ12882 1025 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 SLC35G1Q2M3R5 365 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 BLIDQ8IZY5 108 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 CCDC94Q9BW85 323 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 GSTO1P78417 241 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 HOMER1Q86YM7 354 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 AMOTL1Q8IY63 956 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 CCDC34Q96HJ3 373 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 TMX1Q9H3N1 280 aa20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 MORC2Q9Y6X9 1032 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-201ENST00000291842 BTDP43251 543 aa20.86■□□□□ 0.93
SHKBP1-201ENST00000291842 GJD4Q96KN9 370 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-201ENST00000291842 CD209Q9NNX6 404 aa20.86■□□□□ 0.93
SHKBP1-201ENST00000291842 CYTH3O43739 400 aa20.86■□□□□ 0.93
SHKBP1-201ENST00000291842 DHX8Q14562 1220 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-201ENST00000291842 RTFDC1Q9BY42 306 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-201ENST00000291842 ERCC5P28715 1186 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 SPECC1LQ69YQ0 1117 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 HEATR3Q7Z4Q2 680 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms