RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PTPN14Q15678 1187 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 E4F1Q66K89 784 aaPredicted RBP22.92■■□□□ 1.26
VPS53-201ENST00000291074 USP17L1Q7RTZ2 530 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 STAG2Q8N3U4 1231 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 KAT14Q9H8E8 782 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 INTS13Q9NVM9 706 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 SAP30BPQ9UHR5 308 aaKnown RBP22.92■■□□□ 1.26
VPS53-201ENST00000291074 MTMR7Q9Y216 660 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 PFKFB3Q16875 520 aaPredicted RBP22.91■■□□□ 1.26
VPS53-201ENST00000291074 GPKOWQ92917 476 aaPredicted RBP eCLIP22.91■■□□□ 1.26
VPS53-201ENST00000291074 GJD4Q96KN9 370 aaPredicted RBP22.91■■□□□ 1.26
VPS53-201ENST00000291074 MED15Q96RN5 788 aa22.91■■□□□ 1.26
VPS53-201ENST00000291074 CDK5RAP2Q96SN8 1893 aa22.91■■□□□ 1.26
VPS53-201ENST00000291074 VWA3AA6NCI4 1184 aa22.91■■□□□ 1.26
VPS53-201ENST00000291074 PTGDRQ13258 359 aa22.91■■□□□ 1.26
VPS53-201ENST00000291074 ZNF804AQ7Z570 1209 aa22.91■■□□□ 1.26
VPS53-201ENST00000291074 BCL11BQ9C0K0 894 aaPredicted RBP22.91■■□□□ 1.26
VPS53-201ENST00000291074 MAPKAPK5Q8IW41 473 aa22.9■■□□□ 1.26
VPS53-201ENST00000291074 PNMA1Q8ND90 353 aa22.9■■□□□ 1.26
VPS53-201ENST00000291074 RPGRQ92834 1020 aaKnown RBP22.9■■□□□ 1.26
VPS53-201ENST00000291074 NFE2L3Q9Y4A8 694 aa22.9■■□□□ 1.26
VPS53-201ENST00000291074 PLCD1P51178 756 aa22.9■■□□□ 1.26
VPS53-201ENST00000291074 MAP7D2Q96T17 732 aa22.9■■□□□ 1.26
VPS53-201ENST00000291074 CTIFO43310 598 aaKnown RBP22.89■■□□□ 1.26
VPS53-201ENST00000291074 CBFA2T2O43439 604 aa22.89■■□□□ 1.26
VPS53-201ENST00000291074 UFL1O94874 794 aa22.89■■□□□ 1.26
VPS53-201ENST00000291074 MKNK2Q9HBH9 465 aa22.89■■□□□ 1.26
VPS53-201ENST00000291074 UBR3Q6ZT12 1888 aa22.89■■□□□ 1.25
VPS53-201ENST00000291074 KANK3Q6NY19 840 aa22.89■■□□□ 1.25
VPS53-201ENST00000291074 VSTM4Q8IW00 320 aa22.89■■□□□ 1.25
VPS53-201ENST00000291074 MLKLQ8NB16 471 aa22.89■■□□□ 1.25
VPS53-201ENST00000291074 FERMT2Q96AC1 680 aa22.89■■□□□ 1.25
VPS53-201ENST00000291074 SPATA20Q8TB22 786 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 PAXBP1Q9Y5B6 917 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 MORC2Q9Y6X9 1032 aaPredicted RBP22.88■■□□□ 1.25
VPS53-201ENST00000291074 KIF5BP33176 963 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 MCM7P33993 719 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 ATP2C1P98194 919 aaPredicted RBP22.88■■□□□ 1.25
VPS53-201ENST00000291074 CCDC112Q8NEF3 446 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 STAMQ92783 540 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 PAGE5Q96GU1 130 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 FAM205AQ6ZU69 1335 aa22.88■■□□□ 1.25
VPS53-201ENST00000291074 MEX3CQ5U5Q3 659 aaKnown RBP22.87■■□□□ 1.25
VPS53-201ENST00000291074 TMED8Q6PL24 325 aaPredicted RBP22.87■■□□□ 1.25
VPS53-201ENST00000291074 RASGRP2Q7LDG7 609 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 RASGRP4Q8TDF6 673 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 RTFDC1Q9BY42 306 aaPredicted RBP22.87■■□□□ 1.25
VPS53-201ENST00000291074 BAG3O95817 575 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 SLFN14P0C7P3 912 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 SLC35G1Q2M3R5 365 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 PPP1R13BQ96KQ4 1090 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 SAMSN1Q9NSI8 373 aaKnown RBP22.87■■□□□ 1.25
VPS53-201ENST00000291074 SPATA31A6Q5VVP1 1343 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 ROBO3Q96MS0 1386 aa22.87■■□□□ 1.25
VPS53-201ENST00000291074 BMP15O95972 392 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 TSPY3P0CV98 308 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 TSPY8P0CW00 308 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 GYS1P13807 737 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 GSTO1P78417 241 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 IL17AQ16552 155 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 TYW1BQ6NUM6 668 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 DGKHQ86XP1 1220 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 TRIML1Q8N9V2 468 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 CD209Q9NNX6 404 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 KCND1Q9NSA2 647 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 TOP1P11387 765 aaKnown RBP22.86■■□□□ 1.25
VPS53-201ENST00000291074 ZNF18P17022 549 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 NAA30Q147X3 362 aaPredicted RBP22.86■■□□□ 1.25
VPS53-201ENST00000291074 SH3RF1Q7Z6J0 888 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 ENOX1Q8TC92 643 aaKnown RBP22.86■■□□□ 1.25
VPS53-201ENST00000291074 NOL10Q9BSC4 688 aaKnown RBP22.86■■□□□ 1.25
VPS53-201ENST00000291074 DACH1Q9UI36 760 aa22.86■■□□□ 1.25
VPS53-201ENST00000291074 ZBTB22O15209 634 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 BTDP43251 543 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 PPP4CP60510 307 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 SEPT12Q8IYM1 358 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 SMYD4Q8IYR2 804 aaPredicted RBP22.85■■□□□ 1.25
VPS53-201ENST00000291074 MAD2L2Q9UI95 211 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 CD44P16070 742 aaKnown RBP22.85■■□□□ 1.25
VPS53-201ENST00000291074 CDK11BP21127 795 aaKnown RBP22.85■■□□□ 1.25
VPS53-201ENST00000291074 KLHL10Q6JEL2 608 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 MTERF4Q7Z6M4 381 aaKnown RBP22.85■■□□□ 1.25
VPS53-201ENST00000291074 STX8Q9UNK0 236 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 AFF2P51816 1311 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 SERPINB2P05120 415 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 GRM4Q14833 912 aa22.85■■□□□ 1.25
VPS53-201ENST00000291074 MYO1BO43795 1136 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 AMOTL1Q8IY63 956 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 ZNF444Q8N0Y2 327 aaPredicted RBP22.84■■□□□ 1.25
VPS53-201ENST00000291074 RASA1P20936 1047 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 STX17P56962 302 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 NCBP1Q09161 790 aaKnown RBP22.84■■□□□ 1.25
VPS53-201ENST00000291074 CRY2Q49AN0 593 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 BLIDQ8IZY5 108 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 CPVLQ9H3G5 476 aa22.84■■□□□ 1.25
VPS53-201ENST00000291074 CYTH3O43739 400 aa22.83■■□□□ 1.25
VPS53-201ENST00000291074 GOLGA8HP0CJ92 632 aa22.83■■□□□ 1.25
VPS53-201ENST00000291074 DPYDQ12882 1025 aa22.83■■□□□ 1.25
VPS53-201ENST00000291074 C15orf52Q6ZUT6 534 aaKnown RBP22.83■■□□□ 1.25
VPS53-201ENST00000291074 ANKS1AQ92625 1134 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms