RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 CTCFLQ8NI51 663 aaPredicted RBP17.8■□□□□ 0.44
COPS3-201ENST00000268717 NUP133Q8WUM0 1156 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 PHKBQ93100 1093 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 SLC26A6Q9BXS9 759 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 KAT14Q9H8E8 782 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 DDX4Q9NQI0 724 aaKnown RBP17.8■□□□□ 0.44
COPS3-201ENST00000268717 IL17RBQ9NRM6 502 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 TLL2Q9Y6L7 1015 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 PPFIA3O75145 1194 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 HLA-DOAP06340 250 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 KIF5BP33176 963 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 DEKP35659 375 aaKnown RBP17.8■□□□□ 0.44
COPS3-201ENST00000268717 KIF23Q02241 960 aaPredicted RBP17.8■□□□□ 0.44
COPS3-201ENST00000268717 FUT2Q10981 343 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 TRIM29Q14134 588 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 DLGAP5Q15398 846 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 CFAP100Q494V2 611 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 TMTC3Q6ZXV5 915 aa17.8■□□□□ 0.44
COPS3-201ENST00000268717 RBM27Q9P2N5 1060 aaKnown RBP17.8■□□□□ 0.44
COPS3-201ENST00000268717 TCHHQ07283 1943 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 NMT2O60551 498 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 PICALMQ13492 652 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 SAPCD2Q86UD0 394 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 SLC44A5Q8NCS7 719 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 LEO1Q8WVC0 666 aaPredicted RBP17.79■□□□□ 0.44
COPS3-201ENST00000268717 SPATA32Q96LK8 384 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 GZF1Q9H116 711 aaPredicted RBP17.79■□□□□ 0.44
COPS3-201ENST00000268717 SERPINB13Q9UIV8 391 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 SCAF8Q9UPN6 1271 aaKnown RBP17.79■□□□□ 0.44
COPS3-201ENST00000268717 PCDHAC2Q9Y5I4 1007 aa17.79■□□□□ 0.44
COPS3-201ENST00000268717 SPDYE2BA6NHP3 402 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 PRPF3O43395 683 aaKnown RBP17.78■□□□□ 0.44
COPS3-201ENST00000268717 GADD45BO75293 160 aaPredicted RBP17.78■□□□□ 0.44
COPS3-201ENST00000268717 SPDYE6P0CI01 402 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 VEGFBP49765 207 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 ZNF445P59923 1031 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 PPP4R3BQ5MIZ7 849 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 KRT40Q6A162 431 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 CAVIN1Q6NZI2 390 aaKnown RBP17.78■□□□□ 0.44
COPS3-201ENST00000268717 CDCA5Q96FF9 252 aa17.78■□□□□ 0.44
COPS3-201ENST00000268717 FSD2A1L4K1 749 aa17.77■□□□□ 0.44
COPS3-201ENST00000268717 GNAQP50148 359 aa17.77■□□□□ 0.44
COPS3-201ENST00000268717 AKAP17AQ02040 695 aaKnown RBP17.77■□□□□ 0.44
COPS3-201ENST00000268717 GUCY1B3Q02153 619 aa17.77■□□□□ 0.44
COPS3-201ENST00000268717 FAM173BQ6P4H8 233 aa17.77■□□□□ 0.44
COPS3-201ENST00000268717 PNMA1Q8ND90 353 aa17.77■□□□□ 0.44
COPS3-201ENST00000268717 RCOR1Q9UKL0 485 aa17.77■□□□□ 0.44
COPS3-201ENST00000268717 ENTPD3O75355 529 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 XBP1P17861 261 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 U2AF2P26368 475 aaKnown RBP eCLIP17.76■□□□□ 0.43
COPS3-201ENST00000268717 APOBEC3FQ8IUX4 373 aaKnown RBP17.76■□□□□ 0.43
COPS3-201ENST00000268717 PRMT6Q96LA8 375 aaPredicted RBP17.76■□□□□ 0.43
COPS3-201ENST00000268717 GBA2Q9HCG7 927 aaPredicted RBP17.76■□□□□ 0.43
COPS3-201ENST00000268717 ATRNL1Q5VV63 1379 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 CNTNAP5Q8WYK1 1306 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 RBM5P52756 815 aaKnown RBP eCLIP17.76■□□□□ 0.43
COPS3-201ENST00000268717 FOSBP53539 338 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 NFIAQ12857 509 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 GRM4Q14833 912 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 ZSCAN23Q3MJ62 389 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 HHIPL1Q96JK4 782 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 LZTS2Q9BRK4 669 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 RTEL1Q9NZ71 1219 aa17.76■□□□□ 0.43
COPS3-201ENST00000268717 IGKV6D-41A0A0C4DH26 115 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 MYO1BO43795 1136 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 MMP1P03956 469 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 TOP1P11387 765 aaKnown RBP17.75■□□□□ 0.43
COPS3-201ENST00000268717 SAFBQ15424 915 aaKnown RBP eCLIP17.75■□□□□ 0.43
COPS3-201ENST00000268717 L1TD1Q5T7N2 865 aaKnown RBP17.75■□□□□ 0.43
COPS3-201ENST00000268717 MYSM1Q5VVJ2 828 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 OTUD7BQ6GQQ9 843 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 METTL16Q86W50 562 aaKnown RBP17.75■□□□□ 0.43
COPS3-201ENST00000268717 FAM177A1Q8N128 213 aaPredicted RBP17.75■□□□□ 0.43
COPS3-201ENST00000268717 CCDC17Q96LX7 622 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 AIFM3Q96NN9 605 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 TMEM47Q9BQJ4 181 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 POLR3EQ9NVU0 708 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 TMEM63CQ9P1W3 806 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 FAM198AQ9UFP1 575 aa17.75■□□□□ 0.43
COPS3-201ENST00000268717 THSD7BQ9C0I4 1608 aa17.74■□□□□ 0.43
COPS3-201ENST00000268717 PAPPA2Q9BXP8 1791 aa17.74■□□□□ 0.43
COPS3-201ENST00000268717 GOLGA6L3A6NEY3 463 aa17.74■□□□□ 0.43
COPS3-201ENST00000268717 YEATS4O95619 227 aa17.74■□□□□ 0.43
COPS3-201ENST00000268717 PAXIP1Q6ZW49 1069 aaPredicted RBP17.74■□□□□ 0.43
COPS3-201ENST00000268717 C2orf69Q8N8R5 385 aa17.74■□□□□ 0.43
COPS3-201ENST00000268717 FOXP1Q9H334 677 aaPredicted RBP17.74■□□□□ 0.43
COPS3-201ENST00000268717 TFIP11Q9UBB9 837 aaKnown RBP17.74■□□□□ 0.43
COPS3-201ENST00000268717 PI4KBQ9UBF8 816 aa17.74■□□□□ 0.43
COPS3-201ENST00000268717 LETM1O95202 739 aaPredicted RBP17.73■□□□□ 0.43
COPS3-201ENST00000268717 PLEKHA8P1O95397 391 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 GUCY1A2P33402 732 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 SHMT1P34896 483 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 NASPP49321 788 aaPredicted RBP17.73■□□□□ 0.43
COPS3-201ENST00000268717 HUNKP57058 714 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 PKN1Q16512 942 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 CCDC183Q5T5S1 534 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 FKBP1CQ5VVH2 108 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 PRAMEF18Q5VWM3 479 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 CYP4F22Q6NT55 531 aa17.73■□□□□ 0.43
COPS3-201ENST00000268717 FOXP4Q8IVH2 680 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms