RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 LONRF2Q1L5Z9 754 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 CAVIN4Q5BKX8 364 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 IQUBQ8NA54 791 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 GDAP1L1Q96MZ0 367 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 TFCP2L1Q9NZI6 479 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 VPS18Q9P253 973 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 ENC1O14682 589 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 ERCC5P28715 1186 aaPredicted RBP14.3□□□□□ -0.12
LIG1-201ENST00000263274 TBX2Q13207 712 aaPredicted RBP14.3□□□□□ -0.12
LIG1-201ENST00000263274 CUL4BQ13620 913 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 TRIML1Q8N9V2 468 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 GPKOWQ92917 476 aaPredicted RBP eCLIP14.3□□□□□ -0.121e-9■■■■■ 32.6
LIG1-201ENST00000263274 CAPZA3Q96KX2 299 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 C8orf37Q96NL8 207 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 CAMTA1Q9Y6Y1 1673 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 STRCP1A6NGW2 1772 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 ABCC6O95255 1503 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 TBC1D8O95759 1140 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 ERCC3P19447 782 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 FGFR2P21802 821 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 CTAGE1Q96RT6 745 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 RNF26Q9BY78 433 aaPredicted RBP14.3□□□□□ -0.12
LIG1-201ENST00000263274 GDAQ9Y2T3 454 aa14.3□□□□□ -0.12
LIG1-201ENST00000263274 MYO1BO43795 1136 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 VEGFAP15692 232 aaPredicted RBP14.29□□□□□ -0.12
LIG1-201ENST00000263274 ZNF512BQ96KM6 892 aaPredicted RBP14.29□□□□□ -0.12
LIG1-201ENST00000263274 TFR2Q9UP52 801 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 GOLGB1Q14789 3259 aaKnown RBP14.29□□□□□ -0.12
LIG1-201ENST00000263274 A0A1B0GTH6 734 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 FAM237AA0A1B0GTK4 181 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 TXLNAP40222 546 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 SARSP49591 514 aaKnown RBP14.29□□□□□ -0.12
LIG1-201ENST00000263274 NELFBQ8WX92 580 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 PDE11AQ9HCR9 933 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 RTL9Q8NET4 1388 aa14.29□□□□□ -0.12
LIG1-201ENST00000263274 STAT6P42226 847 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 EIF5P55010 431 aaKnown RBP14.28□□□□□ -0.12
LIG1-201ENST00000263274 KRT31Q15323 416 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 CNGA4Q8IV77 575 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 RABGGTAQ92696 567 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 CTAGE15A4D2H0 777 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 TRIM49BA6NDI0 452 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 ZRANB2O95218 330 aaKnown RBP eCLIP14.28□□□□□ -0.12
LIG1-201ENST00000263274 CTAGE8P0CG41 777 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 FAM193AP78312 1265 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 HSP90B2PQ58FF3 399 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 CTAGE6Q86UF2 777 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 ANKRD18AQ8IVF6 992 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 CTAGE4Q8IX94 777 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 PHRF1Q9P1Y6 1649 aaKnown RBP14.28□□□□□ -0.12
LIG1-201ENST00000263274 CYP2D6P10635 497 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 NCAPH2Q6IBW4 605 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 SRGAP1Q7Z6B7 1085 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 ZNF579Q8NAF0 562 aaKnown RBP14.28□□□□□ -0.12
LIG1-201ENST00000263274 TRIM10Q9UDY6 481 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 ADD3Q9UEY8 706 aaKnown RBP14.28□□□□□ -0.12
LIG1-201ENST00000263274 CDC23Q9UJX2 597 aa14.28□□□□□ -0.12
LIG1-201ENST00000263274 NWD2Q9ULI1 1742 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 MFAP3LO75121 409 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 IL6STP40189 918 aaPredicted RBP14.27□□□□□ -0.12
LIG1-201ENST00000263274 DPYDQ12882 1025 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 PAK1Q13153 545 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 KIAA1328Q86T90 577 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 CAGE1Q8TC20 777 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 TRIM47Q96LD4 638 aa14.27□□□□□ -0.12
LIG1-201ENST00000263274 BCCIPQ9P287 314 aaKnown RBP eCLIP14.27□□□□□ -0.12
LIG1-201ENST00000263274 PP2D1A8MPX8 630 aa14.27□□□□□ -0.13
LIG1-201ENST00000263274 ERLIN1O75477 346 aa14.27□□□□□ -0.13
LIG1-201ENST00000263274 CRKLP46109 303 aaKnown RBP14.27□□□□□ -0.13
LIG1-201ENST00000263274 PKN1Q16512 942 aa14.27□□□□□ -0.13
LIG1-201ENST00000263274 KIFC2Q96AC6 838 aa14.27□□□□□ -0.13
LIG1-201ENST00000263274 AK7Q96M32 723 aa14.27□□□□□ -0.13
LIG1-201ENST00000263274 CHP1Q99653 195 aa14.27□□□□□ -0.13
LIG1-201ENST00000263274 CCDC194A0A1B0GVG4 234 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 KCNJ18B7U540 433 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 GYPCP04921 128 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 CAPN2P17655 700 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 UBA7P41226 1012 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 KCNJ12Q14500 433 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 CEP112Q8N8E3 955 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 FERMT2Q96AC1 680 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 GSDMAQ96QA5 445 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 VAT1LQ9HCJ6 419 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 MCM9Q9NXL9 1143 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 MAGEC2Q9UBF1 373 aaPredicted RBP14.26□□□□□ -0.13
LIG1-201ENST00000263274 IPO7O95373 1038 aaKnown RBP14.26□□□□□ -0.13
LIG1-201ENST00000263274 CYP2C19P33261 490 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 COPB1P53618 953 aaKnown RBP14.26□□□□□ -0.13
LIG1-201ENST00000263274 ZNF34Q8IZ26 560 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 RGS22Q8NE09 1264 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 CNKSR2Q8WXI2 1034 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 SHISA4Q96DD7 197 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 NGLY1Q96IV0 654 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 PANX2Q96RD6 677 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 NAPGQ99747 312 aaPredicted RBP14.26□□□□□ -0.13
LIG1-201ENST00000263274 STX8Q9UNK0 236 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 PPP1R3GB7ZBB8 358 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 ZMYND10O75800 440 aa14.26□□□□□ -0.13
LIG1-201ENST00000263274 SRBD1Q8N5C6 995 aaKnown RBP14.26□□□□□ -0.13
LIG1-201ENST00000263274 DRC1Q96MC2 740 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms