RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SUPT20HL1Q3ZLR7 823 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 CDC42EP5Q6NZY7 148 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 KIF23Q02241 960 aaPredicted RBP13.17□□□□□ -0.3
VPS4A-201ENST00000254950 FERMT2Q96AC1 680 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 SERPINA10Q9UK55 444 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 TMEM232C9JQI7 657 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 NMT2O60551 498 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 ZBED4O75132 1171 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 ANTXR2P58335 489 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 UVSSAQ2YD98 709 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 USH1GQ495M9 461 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 TBC1D10BQ4KMP7 808 aaPredicted RBP13.17□□□□□ -0.3
VPS4A-201ENST00000254950 ISM2Q6H9L7 571 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 IGDCC4Q8TDY8 1250 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 KIFC2Q96AC6 838 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 AIFM3Q96NN9 605 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 STK36Q9NRP7 1315 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 NWD2Q9ULI1 1742 aa13.17□□□□□ -0.3
VPS4A-201ENST00000254950 TYRO3Q06418 890 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 CPXCR1Q8N123 301 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 FAM200AQ8TCP9 573 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 CEP95Q96GE4 821 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 CAMKK2Q96RR4 588 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 MPHOSPH6Q99547 160 aaKnown RBP13.16□□□□□ -0.3
VPS4A-201ENST00000254950 RMND1Q9NWS8 449 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 KCNH3Q9ULD8 1083 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 ZBTB12Q9Y330 459 aaPredicted RBP13.16□□□□□ -0.3
VPS4A-201ENST00000254950 PLEKHA8P1O95397 391 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 GH2P01242 217 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 ADALQ6DHV7 355 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 ZNF408Q9H9D4 720 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 USP25Q9UHP3 1055 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 FAM196BA6NMK8 535 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 CCNT1O60563 726 aaKnown RBP13.16□□□□□ -0.3
VPS4A-201ENST00000254950 RESTQ13127 1097 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 MIGA2Q7L4E1 593 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 FBXO11Q86XK2 927 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 SAMM50Q9Y512 469 aa13.16□□□□□ -0.3
VPS4A-201ENST00000254950 PSMD14O00487 310 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 ENTPD3O75355 529 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 KIF20AO95235 890 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 MMP1P03956 469 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 ASNSP08243 561 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 ANO6Q4KMQ2 910 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 RTEL1Q9NZ71 1219 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 BMP3P12645 472 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 MCTP2Q6DN12 878 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 ADGRA1Q86SQ6 560 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 CLSTN2Q9H4D0 955 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 PSTPIP2Q9H939 334 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 HERC5Q9UII4 1024 aaKnown RBP13.15□□□□□ -0.3
VPS4A-201ENST00000254950 CDC27P30260 824 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 PAXIP1Q6ZW49 1069 aaPredicted RBP13.15□□□□□ -0.3
VPS4A-201ENST00000254950 AMIGO3Q86WK7 504 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 SPICE1Q8N0Z3 855 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 NOC3LQ8WTT2 800 aaKnown RBP13.15□□□□□ -0.3
VPS4A-201ENST00000254950 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS4A-201ENST00000254950 PCDHA1Q9Y5I3 950 aa13.15□□□□□ -0.3
VPS4A-201ENST00000254950 CCDC174Q6PII3 467 aa13.15□□□□□ -0.31
VPS4A-201ENST00000254950 KCTD1Q719H9 257 aa13.15□□□□□ -0.31
VPS4A-201ENST00000254950 AMNQ9BXJ7 453 aa13.15□□□□□ -0.31
VPS4A-201ENST00000254950 RTFDC1Q9BY42 306 aaPredicted RBP13.15□□□□□ -0.31
VPS4A-201ENST00000254950 RNF181Q9P0P0 153 aa13.15□□□□□ -0.31
VPS4A-201ENST00000254950 B4DLN1 442 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 CFBP00751 764 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 PLCD1P51178 756 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 BIN2Q9UBW5 565 aaPredicted RBP13.14□□□□□ -0.31
VPS4A-201ENST00000254950 hCG_1984214I3L0E3 225 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 AKR1B1P15121 316 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 FILIP1Q7Z7B0 1213 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 ZNF713Q8N859 430 aaPredicted RBP13.14□□□□□ -0.31
VPS4A-201ENST00000254950 AGBL3Q8NEM8 1001 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 DNAJC25Q9H1X3 360 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 SEPT2Q15019 361 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 C16orf86Q6ZW13 317 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 PIGSQ96S52 555 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 POLR3EQ9NVU0 708 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 C5P01031 1676 aa13.14□□□□□ -0.31
VPS4A-201ENST00000254950 ZNF202O95125 648 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 TRAPPC10P48553 1259 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 INF2Q27J81 1249 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 PPFIBP1Q86W92 1011 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 EXOC1Q9NV70 894 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 TMEM63CQ9P1W3 806 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 SLC16A2P36021 539 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 GRM4Q14833 912 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 ZDHHC15Q96MV8 337 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 TSG101Q99816 390 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 RCOR1Q9UKL0 485 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 PNMA2Q9UL42 364 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 PCDHA4Q9UN74 947 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 MRPL11Q9Y3B7 192 aaKnown RBP13.13□□□□□ -0.31
VPS4A-201ENST00000254950 RASA1P20936 1047 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 TXKP42681 527 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 ASIC1P78348 528 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 NR5A1Q13285 461 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 SLC39A14Q15043 492 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 CLIC4Q9Y696 253 aa13.13□□□□□ -0.31
VPS4A-201ENST00000254950 POLR2DO15514 142 aaKnown RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 NEMFO60524 1076 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms