RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 POTEFA5A3E0 1075 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 CNMDO75829 334 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 ERVK-9P63128 1117 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 ERVK-24P63145 666 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 SPICE1Q8N0Z3 855 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 COA7Q96BR5 231 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 SH2D4AQ9H788 454 aa27.36■■□□□ 1.97
LSM4-201ENST00000252816 MYCP01106 439 aaPredicted RBP27.35■■□□□ 1.97
LSM4-201ENST00000252816 GRK4P32298 578 aa27.35■■□□□ 1.97
LSM4-201ENST00000252816 MLLT1Q03111 559 aaPredicted RBP27.35■■□□□ 1.97
LSM4-201ENST00000252816 LPAR1Q92633 364 aa27.35■■□□□ 1.97
LSM4-201ENST00000252816 KIAA0100Q14667 2235 aaKnown RBP27.35■■□□□ 1.97
LSM4-201ENST00000252816 IGKV6D-41A0A0C4DH26 115 aa27.34■■□□□ 1.97
LSM4-201ENST00000252816 SPDYE16A6NNV3 312 aaPredicted RBP27.34■■□□□ 1.97
LSM4-201ENST00000252816 ALX1Q15699 326 aa27.34■■□□□ 1.97
LSM4-201ENST00000252816 LBX2Q6XYB7 198 aa27.34■■□□□ 1.97
LSM4-201ENST00000252816 ZNF444Q8N0Y2 327 aaPredicted RBP27.34■■□□□ 1.97
LSM4-201ENST00000252816 TANGO6Q9C0B7 1094 aa27.34■■□□□ 1.97
LSM4-201ENST00000252816 ZNF287Q9HBT7 754 aa27.34■■□□□ 1.97
LSM4-201ENST00000252816 RABGAP1Q9Y3P9 1069 aa27.34■■□□□ 1.97
LSM4-201ENST00000252816 PDE4BQ07343 736 aa27.33■■□□□ 1.97
LSM4-201ENST00000252816 PORCNQ9H237 461 aa27.33■■□□□ 1.97
LSM4-201ENST00000252816 GJD2Q9UKL4 321 aa27.33■■□□□ 1.97
LSM4-201ENST00000252816 CCDC171Q6TFL3 1326 aa27.33■■□□□ 1.97
LSM4-201ENST00000252816 SLC3A2P08195 630 aaKnown RBP27.32■■□□□ 1.96
LSM4-201ENST00000252816 HSPD1P10809 573 aaKnown RBP27.32■■□□□ 1.96
LSM4-201ENST00000252816 CTDSPL2Q05D32 466 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 IRF5Q13568 498 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 COG2Q14746 738 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 INCENPQ9NQS7 918 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 BTBD7Q9P203 1132 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 NYAP2Q9P242 653 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 TACC3Q9Y6A5 838 aa27.32■■□□□ 1.96
LSM4-201ENST00000252816 ADCY3O60266 1144 aa27.31■■□□□ 1.96
LSM4-201ENST00000252816 FGAP02671 866 aa27.31■■□□□ 1.96
LSM4-201ENST00000252816 GSPT1P15170 499 aaKnown RBP27.31■■□□□ 1.96
LSM4-201ENST00000252816 ELNP15502 786 aa27.31■■□□□ 1.96
LSM4-201ENST00000252816 MTFR1Q15390 333 aa27.31■■□□□ 1.96
LSM4-201ENST00000252816 SLAIN1Q8ND83 568 aa27.31■■□□□ 1.96
LSM4-201ENST00000252816 ANAPC4Q9UJX5 808 aa27.31■■□□□ 1.96
LSM4-201ENST00000252816 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.31■■□□□ 1.96
LSM4-201ENST00000252816 WDR46O15213 610 aaKnown RBP27.3■■□□□ 1.96
LSM4-201ENST00000252816 TNRC18O15417 2968 aaPredicted RBP27.3■■□□□ 1.96
LSM4-201ENST00000252816 FAM47AQ5JRC9 791 aa27.3■■□□□ 1.96
LSM4-201ENST00000252816 TTC22Q5TAA0 569 aa27.3■■□□□ 1.96
LSM4-201ENST00000252816 CEP95Q96GE4 821 aa27.3■■□□□ 1.96
LSM4-201ENST00000252816 RLFQ13129 1914 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 MAPK4P31152 587 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 CWC27Q6UX04 472 aaKnown RBP27.29■■□□□ 1.96
LSM4-201ENST00000252816 NEDD1Q8NHV4 660 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 TMEM106CQ9BVX2 250 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 GOPCQ9HD26 462 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 DIAPH3Q9NSV4 1193 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 MTMR4Q9NYA4 1195 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 HOXC10Q9NYD6 342 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 PLIN4Q96Q06 1357 aa27.29■■□□□ 1.96
LSM4-201ENST00000252816 FLOT1O75955 427 aa27.28■■□□□ 1.96
LSM4-201ENST00000252816 EN2P19622 333 aaPredicted RBP27.28■■□□□ 1.96
LSM4-201ENST00000252816 TFAP4Q01664 338 aa27.28■■□□□ 1.96
LSM4-201ENST00000252816 PXYLP1Q8TE99 480 aa27.28■■□□□ 1.96
LSM4-201ENST00000252816 BIN2Q9UBW5 565 aaPredicted RBP27.28■■□□□ 1.96
LSM4-201ENST00000252816 CLIP2Q9UDT6 1046 aa27.28■■□□□ 1.96
LSM4-201ENST00000252816 PLXNB2O15031 1838 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 RBBP6Q7Z6E9 1792 aaKnown RBP27.27■■□□□ 1.96
LSM4-201ENST00000252816 RAD21O60216 631 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 TSPY3P0CV98 308 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 TSPY8P0CW00 308 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 DSG3P32926 999 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 GPR142Q7Z601 462 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 FBXO28Q9NVF7 368 aa27.27■■□□□ 1.96
LSM4-201ENST00000252816 MKI67P46013 3256 aaKnown RBP27.26■■□□□ 1.96
LSM4-201ENST00000252816 ZMYM6O95789 1325 aa27.26■■□□□ 1.95
LSM4-201ENST00000252816 HIP1O00291 1037 aa27.26■■□□□ 1.95
LSM4-201ENST00000252816 CCNA1P78396 465 aa27.26■■□□□ 1.95
LSM4-201ENST00000252816 FAM83BQ5T0W9 1011 aa27.26■■□□□ 1.95
LSM4-201ENST00000252816 CCAR1Q8IX12 1150 aaKnown RBP27.26■■□□□ 1.95
LSM4-201ENST00000252816 MKL1Q969V6 931 aa27.26■■□□□ 1.95
LSM4-201ENST00000252816 ATG4CQ96DT6 458 aa27.26■■□□□ 1.95
LSM4-201ENST00000252816 F5H6K3 240 aa27.25■■□□□ 1.95
LSM4-201ENST00000252816 NDUFB10O96000 172 aa27.25■■□□□ 1.95
LSM4-201ENST00000252816 INHAP05111 366 aa27.25■■□□□ 1.95
LSM4-201ENST00000252816 FGRP09769 529 aa27.25■■□□□ 1.95
LSM4-201ENST00000252816 MFAP1P55081 439 aaKnown RBP27.25■■□□□ 1.95
LSM4-201ENST00000252816 KLRC3Q07444 240 aa27.25■■□□□ 1.95
LSM4-201ENST00000252816 PLEKHH3Q7Z736 793 aa27.25■■□□□ 1.95
LSM4-201ENST00000252816 NUP88Q99567 741 aaPredicted RBP27.25■■□□□ 1.95
LSM4-201ENST00000252816 TTLL1O95922 423 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 CCL5P13501 91 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 CYP2B6P20813 491 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 HAND2P61296 217 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 UBXN2AP68543 259 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 MORN1Q5T089 497 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 SAMD1Q6SPF0 538 aaPredicted RBP27.24■■□□□ 1.95
LSM4-201ENST00000252816 USP6NLQ92738 828 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 NUDT12Q9BQG2 462 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 A0A0G2JMZ2 1700 aa27.24■■□□□ 1.95
LSM4-201ENST00000252816 ORC4O43929 436 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 LRRC47Q8N1G4 583 aaKnown RBP27.23■■□□□ 1.95
LSM4-201ENST00000252816 SOCS4Q8WXH5 440 aa27.23■■□□□ 1.95
LSM4-201ENST00000252816 MOV10L1Q9BXT6 1211 aaKnown RBP27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms