RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NEK8Q86SG6 692 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 VTI1AQ96AJ9 217 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 TCEANC2Q96MN5 208 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 A0A1W2PQ27 194 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 A0A1W2PQ64 194 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 A0A1W2PQD8 194 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 PPP6R2O75170 966 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 FILIP1Q7Z7B0 1213 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 NUP88Q99567 741 aaPredicted RBP15.36■□□□□ 0.05
LDLR-201ENST00000252444 PSTPIP2Q9H939 334 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 PIH1D3Q9NQM4 214 aaKnown RBP15.36■□□□□ 0.05
LDLR-201ENST00000252444 JAG2Q9Y219 1238 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 KCNQ2O43526 872 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 SLC4A8Q2Y0W8 1093 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 FAM160B1Q5W0V3 765 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 FCHSD1Q86WN1 690 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 AGBL3Q8NEM8 1001 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 ZKSCAN3Q9BRR0 538 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 WWC3Q9ULE0 1092 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 LRWD1Q9UFC0 647 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 CCNT1O60563 726 aaKnown RBP15.35■□□□□ 0.05
LDLR-201ENST00000252444 PDIA3P30101 505 aaKnown RBP15.35■□□□□ 0.05
LDLR-201ENST00000252444 PIK3AP1Q6ZUJ8 805 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 ZSCAN30Q86W11 494 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 MAP3K14Q99558 947 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 NUP58Q9BVL2 599 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 FEM1BQ9UK73 627 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 PCDHA4Q9UN74 947 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 ADALQ6DHV7 355 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 LMBR1Q8WVP7 490 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 NUCKS1Q9H1E3 243 aaKnown RBP15.35■□□□□ 0.05
LDLR-201ENST00000252444 ARHGEF35A5YM69 484 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 GPSM2P81274 684 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 ITPK1Q13572 414 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 NECTIN1Q15223 517 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 KLHL10Q6JEL2 608 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 WDR11Q9BZH6 1224 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 MTFR1LQ9H019 292 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 KCNH3Q9ULD8 1083 aa15.35■□□□□ 0.05
LDLR-201ENST00000252444 TCP10L2B9ZVM9 353 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 EPB41P11171 864 aaKnown RBP15.34■□□□□ 0.05
LDLR-201ENST00000252444 BMP3P12645 472 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 DHX58Q96C10 678 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 GPHNQ9NQX3 736 aaPredicted RBP15.34■□□□□ 0.05
LDLR-201ENST00000252444 DACT1Q9NYF0 836 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 TLR7Q9NYK1 1049 aaKnown RBP15.34■□□□□ 0.05
LDLR-201ENST00000252444 FRMD4BQ9Y2L6 1034 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 TCP10Q12799 353 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 TKFCQ3LXA3 575 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 RAB11FIP4Q86YS3 637 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 TEKT3Q9BXF9 490 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 PPP2R3BQ9Y5P8 575 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 BACH1O14867 736 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 CHST3Q7LGC8 479 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 ATG9AQ7Z3C6 839 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 EPHA10Q5JZY3 1008 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 MYSM1Q5VVJ2 828 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 APOA5Q6Q788 366 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 LCORLQ8N3X6 602 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 GIMAP8Q8ND71 665 aaPredicted RBP15.34■□□□□ 0.05
LDLR-201ENST00000252444 TIGD1Q96MW7 591 aa15.34■□□□□ 0.05
LDLR-201ENST00000252444 N4BP3O15049 544 aa15.33■□□□□ 0.05
LDLR-201ENST00000252444 SETQ01105 290 aaPredicted RBP15.33■□□□□ 0.05
LDLR-201ENST00000252444 CCDC24Q8N4L8 307 aa15.33■□□□□ 0.05
LDLR-201ENST00000252444 NOP56O00567 594 aaKnown RBP15.33■□□□□ 0.04
LDLR-201ENST00000252444 SMCR8Q8TEV9 937 aaPredicted RBP15.33■□□□□ 0.04
LDLR-201ENST00000252444 ZEB2O60315 1214 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 SMARCA1P28370 1054 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 STRN3Q13033 797 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 USP17L2Q6R6M4 530 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 LRRC45Q96CN5 670 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 ABCB11O95342 1321 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 YWHAEP62258 255 aaKnown RBP15.33■□□□□ 0.04
LDLR-201ENST00000252444 KRT83P78385 493 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 SKAP1Q86WV1 359 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 SAMD3Q8N6K7 520 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 TBC1D16Q8TBP0 767 aa15.33■□□□□ 0.04
LDLR-201ENST00000252444 SALL1Q9NSC2 1324 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 SCNN1DP51172 638 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 MYL5Q02045 173 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 ME3Q16798 604 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 SYDE2Q5VT97 1194 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 SDR42E1Q8WUS8 393 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 OSBP2Q969R2 916 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 SERPINA10Q9UK55 444 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 OR52Z1P0C646 297 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 DBNDD1Q9H9R9 158 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 LTN1O94822 1766 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 PRDM1O75626 825 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 STAT2P52630 851 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 EN1Q05925 392 aaPredicted RBP15.32■□□□□ 0.04
LDLR-201ENST00000252444 PPP2R3AQ06190 1150 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 ALCAMQ13740 583 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 FBXO33Q7Z6M2 555 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 CELF1Q92879 486 aaKnown RBP15.32■□□□□ 0.04
LDLR-201ENST00000252444 NAA15Q9BXJ9 866 aaKnown RBP15.32■□□□□ 0.04
LDLR-201ENST00000252444 N4BP1O75113 896 aaKnown RBP15.32■□□□□ 0.04
LDLR-201ENST00000252444 CYP21A2P08686 494 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 TYRO3Q06418 890 aa15.32■□□□□ 0.04
LDLR-201ENST00000252444 PDCL2Q8N4E4 241 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms