RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 A0A1B0GTH6 734 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 ADKP55263 362 aaKnown RBP18.68■□□□□ 0.58
HOXD3-201ENST00000249440 SPATA1Q5VX52 437 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 NSUN4Q96CB9 384 aaKnown RBP18.68■□□□□ 0.58
HOXD3-201ENST00000249440 VWA3AA6NCI4 1184 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 ORC4O43929 436 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 TTC38Q5R3I4 469 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 FBXO33Q7Z6M2 555 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 TNFRSF25Q93038 417 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 URI1O94763 535 aaPredicted RBP18.67■□□□□ 0.58
HOXD3-201ENST00000249440 ZNF174Q15697 407 aa18.67■□□□□ 0.58
HOXD3-201ENST00000249440 CELF1Q92879 486 aaKnown RBP18.67■□□□□ 0.58
HOXD3-201ENST00000249440 CRNKL1Q9BZJ0 848 aaKnown RBP18.67■□□□□ 0.58
HOXD3-201ENST00000249440 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.67■□□□□ 0.58
HOXD3-201ENST00000249440 CNTNAP5Q8WYK1 1306 aa18.67■□□□□ 0.58
HOXD3-201ENST00000249440 H2AFXP16104 143 aaPredicted RBP18.67■□□□□ 0.58
HOXD3-201ENST00000249440 KRT222Q8N1A0 295 aa18.67■□□□□ 0.58
HOXD3-201ENST00000249440 UBXN4Q92575 508 aa18.67■□□□□ 0.58
HOXD3-201ENST00000249440 CTAGE1Q96RT6 745 aa18.67■□□□□ 0.58
HOXD3-201ENST00000249440 ATP8A2Q9NTI2 1148 aa18.67■□□□□ 0.58
HOXD3-201ENST00000249440 PDS5AQ29RF7 1337 aaKnown RBP18.66■□□□□ 0.58
HOXD3-201ENST00000249440 ATP2C1P98194 919 aaPredicted RBP18.66■□□□□ 0.58
HOXD3-201ENST00000249440 MECOMQ03112 1051 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 DPYDQ12882 1025 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 PTGDRQ13258 359 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 NPY5RQ15761 445 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 SLC10A5Q5PT55 438 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 SMIM5Q71RC9 77 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 MNS1Q8NEH6 495 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 DCP1AQ9NPI6 582 aaPredicted RBP18.66■□□□□ 0.58
HOXD3-201ENST00000249440 SYNRGQ9UMZ2 1314 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 TRAPPC10P48553 1259 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 CUL4BQ13620 913 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 SRBD1Q8N5C6 995 aaKnown RBP18.66■□□□□ 0.58
HOXD3-201ENST00000249440 LRRN4CLQ8ND94 238 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 PYM1Q9BRP8 204 aaKnown RBP18.66■□□□□ 0.58
HOXD3-201ENST00000249440 PARP3Q9Y6F1 533 aa18.66■□□□□ 0.58
HOXD3-201ENST00000249440 BAZ2BQ9UIF8 2168 aaKnown RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 AKR1B15C9JRZ8 316 aaPredicted RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 ARHGAP29Q52LW3 1261 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 KLHL10Q6JEL2 608 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 ARPP21Q9UBL0 812 aaPredicted RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 SBF2Q86WG5 1849 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 LAMB1P07942 1786 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 WNT7AO00755 349 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 RGL2O15211 777 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 SCG2P13521 617 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 CASQ1P31415 396 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 NLRP5P59047 1200 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 RPS8P62241 208 aaKnown RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 GABPB1Q06547 395 aaPredicted RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 CCDC88AQ3V6T2 1871 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 TMED8Q6PL24 325 aaPredicted RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 BICDL1Q6ZP65 573 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 FAM177A1Q8N128 213 aaPredicted RBP18.65■□□□□ 0.58
HOXD3-201ENST00000249440 IQUBQ8NA54 791 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 PANX2Q96RD6 677 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 FAM53CQ9NYF3 392 aa18.65■□□□□ 0.58
HOXD3-201ENST00000249440 EFCAB8A8MWE9 144 aa18.64■□□□□ 0.57
HOXD3-201ENST00000249440 FANCGO15287 622 aa18.64■□□□□ 0.57
HOXD3-201ENST00000249440 CD44P16070 742 aaKnown RBP18.64■□□□□ 0.57
HOXD3-201ENST00000249440 HIBADHP31937 336 aaKnown RBP18.64■□□□□ 0.57
HOXD3-201ENST00000249440 GNG11P61952 73 aa18.64■□□□□ 0.57
HOXD3-201ENST00000249440 FILIP1LQ4L180 1135 aa18.64■□□□□ 0.57
HOXD3-201ENST00000249440 TOGARAM2Q6ZUX3 1019 aa18.64■□□□□ 0.57
HOXD3-201ENST00000249440 APTXQ7Z2E3 356 aaKnown RBP18.64■□□□□ 0.57
HOXD3-201ENST00000249440 ZNF831Q5JPB2 1677 aa18.64■□□□□ 0.57
HOXD3-201ENST00000249440 TPM1P09493 284 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 STX17P56962 302 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 PFKFB3Q16875 520 aaPredicted RBP18.63■□□□□ 0.57
HOXD3-201ENST00000249440 SBK1Q52WX2 424 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 FAM47AQ5JRC9 791 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 CDKAL1Q5VV42 579 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 PPFIBP1Q86W92 1011 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 LINC00116Q8NCU8 138 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 NAA15Q9BXJ9 866 aaKnown RBP18.63■□□□□ 0.57
HOXD3-201ENST00000249440 ANKRD2Q9GZV1 360 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 ARGLU1Q9NWB6 273 aaPredicted RBP18.63■□□□□ 0.57
HOXD3-201ENST00000249440 NMT2O60551 498 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 CASP1P29466 404 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 BMS1Q14692 1282 aaKnown RBP18.63■□□□□ 0.57
HOXD3-201ENST00000249440 NOM1Q5C9Z4 860 aaKnown RBP18.63■□□□□ 0.57
HOXD3-201ENST00000249440 PIK3AP1Q6ZUJ8 805 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 NLRP3Q96P20 1036 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 NYXQ9GZU5 481 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 ADD3Q9UEY8 706 aaKnown RBP18.63■□□□□ 0.57
HOXD3-201ENST00000249440 BTAF1O14981 1849 aa18.63■□□□□ 0.57
HOXD3-201ENST00000249440 TSPY2A6NKD2 308 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 PPP1R3GB7ZBB8 358 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 TEX33O43247 280 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 KIF5BP33176 963 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 IGSF22Q8N9C0 903 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 ZNF446Q9NWS9 450 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 CCDC175P0C221 793 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 KLRK1P26718 216 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 TBC1D9BQ66K14 1250 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 CARD6Q9BX69 1037 aa18.62■□□□□ 0.57
HOXD3-201ENST00000249440 TADA3O75528 432 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 CLCN6P51797 869 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 MAP3K9P80192 1104 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms