RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 ANKRD23Q86SG2 305 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 ZNF589Q86UQ0 364 aaPredicted RBP13.39□□□□□ -0.27
SF3B6-201ENST00000233468 PROCA1Q8NCQ7 364 aaPredicted RBP13.39□□□□□ -0.27
SF3B6-201ENST00000233468 DSCC1Q9BVC3 393 aa13.39□□□□□ -0.27
SF3B6-201ENST00000233468 ROBO3Q96MS0 1386 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 BACE1P56817 501 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 RRP1BQ14684 758 aaKnown RBP13.38□□□□□ -0.27
SF3B6-201ENST00000233468 IER5LQ5T953 404 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 VPS53Q5VIR6 699 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 FEZ1Q99689 392 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 RNF41Q9H4P4 317 aaPredicted RBP13.38□□□□□ -0.27
SF3B6-201ENST00000233468 KANSL2Q9H9L4 492 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 CPA4Q9UI42 421 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 ANAPC4Q9UJX5 808 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 SLC45A1Q9Y2W3 748 aa13.38□□□□□ -0.27
SF3B6-201ENST00000233468 ZNF213O14771 459 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 MOGSQ13724 837 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 IMMTQ16891 758 aaKnown RBP13.37□□□□□ -0.27
SF3B6-201ENST00000233468 SH3D19Q5HYK7 790 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 USP17L2Q6R6M4 530 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 C17orf99Q6UX52 265 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 GADL1Q6ZQY3 521 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 NBPF11Q86T75 865 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 SLC44A5Q8NCS7 719 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 PARK7Q99497 189 aaKnown RBP13.37□□□□□ -0.27
SF3B6-201ENST00000233468 ARHGEF10LQ9HCE6 1279 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 PNMA3Q9UL41 463 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 DOCK3Q8IZD9 2030 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 PTPRFP10586 1907 aa13.37□□□□□ -0.27
SF3B6-201ENST00000233468 PDHXO00330 501 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 SGSM2O43147 1006 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 CDC45O75419 566 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 TSPY3P0CV98 308 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 TSPY8P0CW00 308 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 OSBPP22059 807 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 ICA1Q05084 483 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 MTMR2Q13614 643 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 SEPT2Q15019 361 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 MTFR1Q15390 333 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 TRIM47Q96LD4 638 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 AGTPBP1Q9UPW5 1226 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 PHIPQ8WWQ0 1821 aa13.36□□□□□ -0.27
SF3B6-201ENST00000233468 FOXP2O15409 715 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 AKR1B1P15121 316 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 PSMC4P43686 418 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 HMGCS2P54868 508 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 KIF22Q14807 665 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 ARHGEF6Q15052 776 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 MFSD6Q6ZSS7 791 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 CCDC84Q86UT8 332 aaPredicted RBP13.35□□□□□ -0.27
SF3B6-201ENST00000233468 STK11IPQ8N1F8 1099 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 KIAA1683Q9H0B3 1180 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 TOMM22Q9NS69 142 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 SZT2Q5T011 3432 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 MYO5AQ9Y4I1 1855 aaKnown RBP13.35□□□□□ -0.27
SF3B6-201ENST00000233468 RANBP2P49792 3224 aaKnown RBP13.35□□□□□ -0.27
SF3B6-201ENST00000233468 ADGRA2Q96PE1 1338 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 TRIOBPQ9H2D6 2365 aa13.35□□□□□ -0.27
SF3B6-201ENST00000233468 TSPY2A6NKD2 308 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 ORC4O43929 436 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 RASA1P20936 1047 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 JAG1P78504 1218 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 AKNAD1Q5T1N1 836 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 GPAT2Q6NUI2 795 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 LPAR1Q92633 364 aa13.34□□□□□ -0.27
SF3B6-201ENST00000233468 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.34□□□□□ -0.27
SF3B6-201ENST00000233468 COLQQ9Y215 455 aaPredicted RBP13.34□□□□□ -0.27
SF3B6-201ENST00000233468 RANBP6O60518 1105 aaKnown RBP13.33□□□□□ -0.28
SF3B6-201ENST00000233468 EIF5BO60841 1220 aaKnown RBP13.33□□□□□ -0.28
SF3B6-201ENST00000233468 PRDM1O75626 825 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 FGRP09769 529 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 CYP2C8P10632 490 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 GUCY1A2P33402 732 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 FXR1P51114 621 aaKnown RBP eCLIP13.33□□□□□ -0.28
SF3B6-201ENST00000233468 IRX3P78415 501 aaPredicted RBP13.33□□□□□ -0.28
SF3B6-201ENST00000233468 TFAP4Q01664 338 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 ATP2B2Q01814 1243 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 CTDSPL2Q05D32 466 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 TRDNQ13061 729 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 CCDC178Q5BJE1 867 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 NEDD1Q8NHV4 660 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 SMCR8Q8TEV9 937 aaPredicted RBP13.33□□□□□ -0.28
SF3B6-201ENST00000233468 GTF3C2Q8WUA4 911 aaPredicted RBP13.33□□□□□ -0.28
SF3B6-201ENST00000233468 STAG1Q8WVM7 1258 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 ESR2Q92731 530 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 SHISA4Q96DD7 197 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 C12orf42Q96LP6 360 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 ESYT1Q9BSJ8 1104 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 CNNM2Q9H8M5 875 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 GOPCQ9HD26 462 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 NYAP2Q9P242 653 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 SRRDQ9UH36 339 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 SYNPO2Q9UMS6 1093 aa13.33□□□□□ -0.28
SF3B6-201ENST00000233468 DOCK1Q14185 1865 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 H0YGN5 161 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 TTLL1O95922 423 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 HOXA7P31268 230 aaPredicted RBP13.32□□□□□ -0.28
SF3B6-201ENST00000233468 HAND2P61296 217 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 SKAP1Q86WV1 359 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 KRT23Q9C075 422 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms