RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ZKSCAN1P17029 563 aaPredicted RBP26.61■■□□□ 1.85
VTI1B-201ENST00000216456 CCND3P30281 292 aaPredicted RBP26.61■■□□□ 1.85
VTI1B-201ENST00000216456 ZSCAN25Q6NSZ9 544 aa26.61■■□□□ 1.85
VTI1B-201ENST00000216456 SAMD1Q6SPF0 538 aaPredicted RBP26.61■■□□□ 1.85
VTI1B-201ENST00000216456 LBX2Q6XYB7 198 aa26.61■■□□□ 1.85
VTI1B-201ENST00000216456 HTATIP2Q9BUP3 242 aa26.61■■□□□ 1.85
VTI1B-201ENST00000216456 CWC22Q9HCG8 908 aaKnown RBP26.61■■□□□ 1.85
VTI1B-201ENST00000216456 GSG1L2A8MUP6 293 aa26.6■■□□□ 1.85
VTI1B-201ENST00000216456 RGS2P41220 211 aa26.6■■□□□ 1.85
VTI1B-201ENST00000216456 ATP2B2Q01814 1243 aa26.6■■□□□ 1.85
VTI1B-201ENST00000216456 CRBNQ96SW2 442 aa26.6■■□□□ 1.85
VTI1B-201ENST00000216456 RANBP2P49792 3224 aaKnown RBP26.6■■□□□ 1.85
VTI1B-201ENST00000216456 MAP2K5Q13163 448 aa26.59■■□□□ 1.85
VTI1B-201ENST00000216456 NPLOC4Q8TAT6 608 aa26.59■■□□□ 1.85
VTI1B-201ENST00000216456 YTHDC1Q96MU7 727 aaKnown RBP26.59■■□□□ 1.85
VTI1B-201ENST00000216456 SEC62Q99442 399 aaKnown RBP26.59■■□□□ 1.85
VTI1B-201ENST00000216456 APBA2Q99767 749 aa26.59■■□□□ 1.85
VTI1B-201ENST00000216456 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.59■■□□□ 1.85
VTI1B-201ENST00000216456 EPB41L4AQ9HCS5 686 aaPredicted RBP26.59■■□□□ 1.85
VTI1B-201ENST00000216456 TMX2Q9Y320 296 aa26.59■■□□□ 1.85
VTI1B-201ENST00000216456 RNF113AO15541 343 aaKnown RBP26.58■■□□□ 1.85
VTI1B-201ENST00000216456 EEF2P13639 858 aaKnown RBP26.58■■□□□ 1.85
VTI1B-201ENST00000216456 PTPREP23469 700 aa26.58■■□□□ 1.85
VTI1B-201ENST00000216456 FXR1P51114 621 aaKnown RBP eCLIP26.58■■□□□ 1.85
VTI1B-201ENST00000216456 COG2Q14746 738 aa26.58■■□□□ 1.85
VTI1B-201ENST00000216456 PI4K2BQ8TCG2 481 aa26.58■■□□□ 1.85
VTI1B-201ENST00000216456 ATG4CQ96DT6 458 aa26.58■■□□□ 1.85
VTI1B-201ENST00000216456 MOV10L1Q9BXT6 1211 aaKnown RBP26.58■■□□□ 1.85
VTI1B-201ENST00000216456 MYH8P13535 1937 aa26.58■■□□□ 1.85
VTI1B-201ENST00000216456 RLFQ13129 1914 aa26.58■■□□□ 1.85
VTI1B-201ENST00000216456 CCNA1P78396 465 aa26.57■■□□□ 1.84
VTI1B-201ENST00000216456 APPBP2Q92624 585 aa26.57■■□□□ 1.84
VTI1B-201ENST00000216456 GPATCH3Q96I76 525 aa26.57■■□□□ 1.84
VTI1B-201ENST00000216456 VCPKMTQ9H867 229 aa26.57■■□□□ 1.84
VTI1B-201ENST00000216456 ARHGEF10LQ9HCE6 1279 aa26.57■■□□□ 1.84
VTI1B-201ENST00000216456 RBM27Q9P2N5 1060 aaKnown RBP26.57■■□□□ 1.84
VTI1B-201ENST00000216456 MINDY4BA8MYZ0 360 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 GPAA1O43292 621 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 AMOTL1Q8IY63 956 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 DDRGK1Q96HY6 314 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 CCDC17Q96LX7 622 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 FBXO28Q9NVF7 368 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 OGDHLQ9ULD0 1010 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 ALPK3Q96L96 1907 aa26.56■■□□□ 1.84
VTI1B-201ENST00000216456 TRIOBPQ9H2D6 2365 aa26.55■■□□□ 1.84
VTI1B-201ENST00000216456 FLOT1O75955 427 aa26.55■■□□□ 1.84
VTI1B-201ENST00000216456 DSG3P32926 999 aa26.55■■□□□ 1.84
VTI1B-201ENST00000216456 GRB14Q14449 540 aa26.55■■□□□ 1.84
VTI1B-201ENST00000216456 NECAB2Q7Z6G3 386 aa26.55■■□□□ 1.84
VTI1B-201ENST00000216456 SLC15A5A6NIM6 579 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 EVI5O60447 810 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 RASA1P20936 1047 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 PLS1Q14651 629 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 LHX8Q68G74 356 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 SPATC1LQ9H0A9 340 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 HOXC10Q9NYD6 342 aa26.54■■□□□ 1.84
VTI1B-201ENST00000216456 ARPP21Q9UBL0 812 aaPredicted RBP26.54■■□□□ 1.84
VTI1B-201ENST00000216456 RAD21O60216 631 aa26.53■■□□□ 1.84
VTI1B-201ENST00000216456 ERCC3P19447 782 aa26.53■■□□□ 1.84
VTI1B-201ENST00000216456 CYP2C19P33261 490 aa26.53■■□□□ 1.84
VTI1B-201ENST00000216456 IVNS1ABPQ9Y6Y0 642 aa26.53■■□□□ 1.84
VTI1B-201ENST00000216456 A0A0G2JMZ2 1700 aa26.53■■□□□ 1.84
VTI1B-201ENST00000216456 PRDM1O75626 825 aa26.52■■□□□ 1.84
VTI1B-201ENST00000216456 SBK1Q52WX2 424 aa26.52■■□□□ 1.84
VTI1B-201ENST00000216456 TRPV1Q8NER1 839 aa26.52■■□□□ 1.84
VTI1B-201ENST00000216456 LPAR1Q92633 364 aa26.52■■□□□ 1.84
VTI1B-201ENST00000216456 NUP88Q99567 741 aaPredicted RBP26.52■■□□□ 1.84
VTI1B-201ENST00000216456 NR2E3Q9Y5X4 410 aa26.52■■□□□ 1.84
VTI1B-201ENST00000216456 PFASO15067 1338 aa26.51■■□□□ 1.83
VTI1B-201ENST00000216456 GLRX3O76003 335 aaKnown RBP26.51■■□□□ 1.83
VTI1B-201ENST00000216456 ADORA2AP29274 412 aa26.51■■□□□ 1.83
VTI1B-201ENST00000216456 TRMT44Q8IYL2 757 aaKnown RBP26.51■■□□□ 1.83
VTI1B-201ENST00000216456 C7orf61Q8IZ16 206 aa26.51■■□□□ 1.83
VTI1B-201ENST00000216456 ANKLE1Q8NAG6 615 aa26.51■■□□□ 1.83
VTI1B-201ENST00000216456 NBPF3Q9H094 633 aa26.51■■□□□ 1.83
VTI1B-201ENST00000216456 KANSL2Q9H9L4 492 aa26.51■■□□□ 1.83
VTI1B-201ENST00000216456 TTC41PQ6P2S7 1318 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 SALL3Q9BXA9 1300 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 WDR46O15213 610 aaKnown RBP26.5■■□□□ 1.83
VTI1B-201ENST00000216456 COBLO75128 1261 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 APPP05067 770 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 TMEM132BQ14DG7 1078 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 FAM83BQ5T0W9 1011 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 PRO3102Q9H379 93 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 C11orf49Q9H6J7 331 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 SH2D4AQ9H788 454 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 ZMYND8Q9ULU4 1186 aaPredicted RBP26.5■■□□□ 1.83
VTI1B-201ENST00000216456 SZT2Q5T011 3432 aa26.5■■□□□ 1.83
VTI1B-201ENST00000216456 HOXC6P09630 235 aa26.49■■□□□ 1.83
VTI1B-201ENST00000216456 MX1P20591 662 aa26.49■■□□□ 1.83
VTI1B-201ENST00000216456 TDO2P48775 406 aa26.49■■□□□ 1.83
VTI1B-201ENST00000216456 CCDC129Q6ZRS4 1044 aa26.49■■□□□ 1.83
VTI1B-201ENST00000216456 NCAPG2Q86XI2 1143 aa26.49■■□□□ 1.83
VTI1B-201ENST00000216456 FSD1Q9BTV5 496 aa26.49■■□□□ 1.83
VTI1B-201ENST00000216456 ROBO3Q96MS0 1386 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 ZFYP08048 801 aaPredicted RBP26.48■■□□□ 1.83
VTI1B-201ENST00000216456 ANKRD45Q5TZF3 282 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 MFSD14CQ5VZR4 134 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 GIMAP6Q6P9H5 292 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 IFNL3Q8IZI9 196 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms