RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ABCC2Q92887 1545 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 KRT16P08779 473 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 CDC25BP30305 580 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TNFAIP1Q13829 316 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGEF18Q6ZSZ5 1173 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TRMT1Q9NXH9 659 aaKnown RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 GUCA1BQ9UMX6 200 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 KRT5P13647 590 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 CCDC93Q567U6 631 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TRPV6Q9H1D0 765 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 KCNK9Q9NPC2 374 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 UHRF1BP1LA0JNW5 1464 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TET3O43151 1660 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TTC36A6NLP5 189 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TRAPPC10P48553 1259 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 CUL1Q13616 776 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 MAP7D3Q8IWC1 876 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 DTX3LQ8TDB6 740 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TSR2Q969E8 191 aaKnown RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 CCDC138Q96M89 665 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 PPCSQ9HAB8 311 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 GIMAP4Q9NUV9 329 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 WASLO00401 505 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 KRT25Q7Z3Z0 450 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 LINS1Q8NG48 757 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 IFIH1Q9BYX4 1025 aaKnown RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 ITGB1BP2Q9UKP3 347 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 DIS3Q9Y2L1 958 aaKnown RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 PARP1P09874 1014 aaKnown RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 PAK1Q13153 545 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 WHAMMQ8TF30 809 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.68□□□□□ -1.342e-7■■■■■ 62.8
VPS13D-201ENST00000011700 C1orf115Q9H7X2 142 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 PPP1R9AQ9ULJ8 1098 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 ATP2B3Q16720 1220 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 MICAL1Q8TDZ2 1067 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 ACTR5Q9H9F9 607 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-201ENST00000011700 ABCF3Q9NUQ8 709 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 WWC3Q9ULE0 1092 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 DAPK3O43293 454 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 RPS6KA1Q15418 735 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 IGSF22Q8N9C0 903 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 SLC12A5Q9H2X9 1139 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 HAUS4Q9H6D7 363 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 AMFRQ9UKV5 643 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 PCDHB13Q9Y5F0 798 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 CARMIL3Q8ND23 1372 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 IL9RQ01113 521 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 BBS5Q8N3I7 341 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 PPP1R2P1Q96PQ5 205 aa6.68□□□□□ -1.34
VPS13D-201ENST00000011700 SBNO2Q9Y2G9 1366 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGAP42A6NI28 874 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 EXOC5O00471 708 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 SMARCA5O60264 1052 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.67□□□□□ -1.341e-9■■■■■ 56.2
VPS13D-201ENST00000011700 NOC4LQ9BVI4 516 aaKnown RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 MPP6Q9NZW5 540 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGEF10O15013 1369 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 PDE1AP54750 535 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 PPP4R3CPQ6ZMV5 832 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 PEX26Q7Z412 305 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TTC39CQ8N584 583 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 SETDB2Q96T68 719 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 KIAA1210Q9ULL0 1709 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 RP1P56715 2156 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 KSR2Q6VAB6 950 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 FNBP4Q8N3X1 1017 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TRIM4Q9C037 500 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TEKT2Q9UIF3 430 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 AMOTL2Q9Y2J4 779 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 RUSC2Q8N2Y8 1516 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 MEIS1O00470 390 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGDIAP52565 204 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 HADHQ16836 314 aaKnown RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ALS2CLQ60I27 953 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 CAV1Q03135 178 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TBC1D8BQ0IIM8 1120 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TPTE2Q6XPS3 522 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 CCDC25Q86WR0 208 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGAP18Q8N392 663 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 STK17AQ9UEE5 414 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TRIM33Q9UPN9 1127 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 KLF18A0A0U1RQI7 1052 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TMEM232C9JQI7 657 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 XPOTO43592 962 aaKnown RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 KRT8P05787 483 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 PSMA3P25788 255 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ILF2Q12905 390 aaKnown RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TRIM60Q495X7 471 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 DCUN1D2Q6PH85 259 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 UBE3BQ7Z3V4 1068 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ZNF354CQ86Y25 554 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 KRT12Q99456 494 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 DCTPP1Q9H773 170 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 PRAG1Q86YV5 1406 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 TMEM247A6NEH6 219 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 M0QZ92 97 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 AP3B1O00203 1094 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 STAT1P42224 750 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms