RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 INHAP05111 366 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 HLA-DOAP06340 250 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 GJB1P08034 283 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 AKR1B1P15121 316 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 GJA8P48165 433 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 ARHGEF6Q15052 776 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 UBE3CQ15386 1083 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 ZYXQ15942 572 aaKnown RBP9.49□□□□□ -0.89
PNKP-229ENST00000637897 CERKLQ49MI3 558 aaPredicted RBP9.49□□□□□ -0.89
PNKP-229ENST00000637897 C12orf60Q5U649 245 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 TMED8Q6PL24 325 aaPredicted RBP9.49□□□□□ -0.89
PNKP-229ENST00000637897 CATSPERGQ6ZRH7 1159 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 NBPF11Q86T75 865 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 RAET1EQ8TD07 263 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 PXYLP1Q8TE99 480 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 CRBNQ96SW2 442 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 KIAA1683Q9H0B3 1180 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 AS3MTQ9HBK9 375 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 EPB41L4AQ9HCS5 686 aaPredicted RBP9.49□□□□□ -0.89
PNKP-229ENST00000637897 PAK6Q9NQU5 681 aaPredicted RBP9.49□□□□□ -0.89
PNKP-229ENST00000637897 MCM9Q9NXL9 1143 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 BTBD7Q9P203 1132 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 SZT2Q5T011 3432 aa9.49□□□□□ -0.89
PNKP-229ENST00000637897 GREB1LQ9C091 1923 aaPredicted RBP9.48□□□□□ -0.89
PNKP-229ENST00000637897 PARP14Q460N5 1801 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 GSG1L2A8MUP6 293 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 USP17L12C9JPN9 530 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 USP17L21D6R901 530 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 M0R2C6 588 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 TNPO2O14787 897 aaKnown RBP9.48□□□□□ -0.89
PNKP-229ENST00000637897 VCAM1P19320 739 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 HOXD10P28358 340 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 GCLCP48506 637 aaPredicted RBP9.48□□□□□ -0.89
PNKP-229ENST00000637897 RAB3GAP1Q15042 981 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 ABCB5Q2M3G0 1257 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 B4GALNT3Q6L9W6 998 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 CTR9Q6PD62 1173 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 USP17L2Q6R6M4 530 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 TTC6Q86TZ1 520 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 CERS3Q8IU89 383 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 SLAIN1Q8ND83 568 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 TRIB2Q92519 343 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 STRBPQ96SI9 672 aaKnown RBP9.48□□□□□ -0.89
PNKP-229ENST00000637897 SEC62Q99442 399 aaKnown RBP9.48□□□□□ -0.89
PNKP-229ENST00000637897 TMEM106CQ9BVX2 250 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 CRISPLD2Q9H0B8 497 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 ECHDC1Q9NTX5 307 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 PNMA3Q9UL41 463 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 TACC3Q9Y6A5 838 aa9.48□□□□□ -0.89
PNKP-229ENST00000637897 SPDYE16A6NNV3 312 aaPredicted RBP9.47□□□□□ -0.89
PNKP-229ENST00000637897 POLR3DP05423 398 aaPredicted RBP9.47□□□□□ -0.89
PNKP-229ENST00000637897 CDK8P49336 464 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 ERVK-9P63128 1117 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 ERVK-24P63145 666 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 CCL14Q16627 93 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 MORN1Q5T089 497 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 MAP3K21Q5TCX8 1036 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 KBTBD3Q8NAB2 608 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 U2AF1L4Q8WU68 220 aaKnown RBP9.47□□□□□ -0.89
PNKP-229ENST00000637897 CRNKL1Q9BZJ0 848 aaKnown RBP9.47□□□□□ -0.89
PNKP-229ENST00000637897 RNF208Q9H0X6 261 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 FLRT1Q9NZU1 646 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 TRIOBPQ9H2D6 2365 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 A0A0G2JMZ2 1700 aa9.47□□□□□ -0.89
PNKP-229ENST00000637897 LAMA3Q16787 3333 aa9.46□□□□□ -0.89
PNKP-229ENST00000637897 SGPL1O95470 568 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 IRX3P78415 501 aaPredicted RBP9.46□□□□□ -0.9
PNKP-229ENST00000637897 LBX2Q6XYB7 198 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 C16orf86Q6ZW13 317 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 GPR142Q7Z601 462 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 GPRC5AQ8NFJ5 357 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 EXOC6Q8TAG9 804 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 DIS3LQ8TF46 1054 aaKnown RBP9.46□□□□□ -0.9
PNKP-229ENST00000637897 RPAP3Q9H6T3 665 aaPredicted RBP9.46□□□□□ -0.9
PNKP-229ENST00000637897 TMOD4Q9NZQ9 345 aa9.46□□□□□ -0.9
PNKP-229ENST00000637897 USP17L15C9J2P7 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L13C9JLJ4 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L11C9JVI0 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L18D6R9N7 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L22D6RA61 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L17D6RBQ6 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L19D6RCP7 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L20D6RJB6 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 H0YGN5 161 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 CYP2B6P20813 491 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 USP17L24Q0WX57 530 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 PABPC4Q13310 644 aaKnown RBP eCLIP9.45□□□□□ -0.9
PNKP-229ENST00000637897 NPLOC4Q8TAT6 608 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 NKX2-3Q8TAU0 364 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 COA7Q96BR5 231 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 DEFB118Q96PH6 123 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 PAGR1Q9BTK6 254 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 PRO3102Q9H379 93 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 CHMP4BQ9H444 224 aaKnown RBP9.45□□□□□ -0.9
PNKP-229ENST00000637897 ATP8A2Q9NTI2 1148 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 TMX2Q9Y320 296 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 SLC4A4Q9Y6R1 1079 aa9.45□□□□□ -0.9
PNKP-229ENST00000637897 IGKV6D-41A0A0C4DH26 115 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 RNF113AO15541 343 aaKnown RBP9.44□□□□□ -0.9
PNKP-229ENST00000637897 RASA1P20936 1047 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms