RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NOM1Q5C9Z4 860 aaKnown RBP11.73□□□□□ -0.53
CLN3-261ENST00000637686 TREML2Q5T2D2 321 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 USP17L2Q6R6M4 530 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 TMEM179Q6ZVK1 233 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 PROCA1Q8NCQ7 364 aaPredicted RBP11.73□□□□□ -0.53
CLN3-261ENST00000637686 ACER1Q8TDN7 264 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 RAD50Q92878 1312 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 ROBO3Q96MS0 1386 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 MKNK2Q9HBH9 465 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 TMOD4Q9NZQ9 345 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 AGTPBP1Q9UPW5 1226 aa11.73□□□□□ -0.53
CLN3-261ENST00000637686 MYH8P13535 1937 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 TLR2O60603 784 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 PRDM1O75626 825 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 SLC3A2P08195 630 aaKnown RBP11.72□□□□□ -0.53
CLN3-261ENST00000637686 CYP2C8P10632 490 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 RASA1P20936 1047 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 CHMLP26374 656 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 CTDSPL2Q05D32 466 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 ZYXQ15942 572 aaKnown RBP11.72□□□□□ -0.53
CLN3-261ENST00000637686 RUFY2Q8WXA3 655 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 PARK7Q99497 189 aaKnown RBP11.72□□□□□ -0.53
CLN3-261ENST00000637686 FEZ1Q99689 392 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 IL25Q9H293 177 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 ZNF287Q9HBT7 754 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 SLC45A1Q9Y2W3 748 aa11.72□□□□□ -0.53
CLN3-261ENST00000637686 A0A1W2PRG0 241 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 SP3Q02447 781 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 ICA1Q05084 483 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 PDE4BQ07343 736 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 C17orf99Q6UX52 265 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 CLEC10AQ8IUN9 316 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 SIAH1Q8IUQ4 282 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 ZNF444Q8N0Y2 327 aaPredicted RBP11.71□□□□□ -0.53
CLN3-261ENST00000637686 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLN3-261ENST00000637686 KIAA1683Q9H0B3 1180 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 INCENPQ9NQS7 918 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 EMILIN3Q9NT22 766 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 CPA4Q9UI42 421 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 ANAPC4Q9UJX5 808 aa11.71□□□□□ -0.53
CLN3-261ENST00000637686 LOC285556D6RIA3 1793 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 ADGRA2Q96PE1 1338 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 OSBPP22059 807 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 USP14P54578 494 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 HAND2P61296 217 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 PABPC4Q13310 644 aaKnown RBP eCLIP11.7□□□□□ -0.54
CLN3-261ENST00000637686 TNS4Q8IZW8 715 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 TACC3Q9Y6A5 838 aa11.7□□□□□ -0.54
CLN3-261ENST00000637686 ZMYM6O95789 1325 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 REC8O95072 547 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 EEF2P13639 858 aaKnown RBP11.69□□□□□ -0.54
CLN3-261ENST00000637686 HOXA7P31268 230 aaPredicted RBP11.69□□□□□ -0.54
CLN3-261ENST00000637686 ATP2B2Q01814 1243 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 FAM47AQ5JRC9 791 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 CTU1Q7Z7A3 348 aaKnown RBP11.69□□□□□ -0.54
CLN3-261ENST00000637686 CD99L2Q8TCZ2 262 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 SMCR8Q8TEV9 937 aaPredicted RBP11.69□□□□□ -0.54
CLN3-261ENST00000637686 ERO1AQ96HE7 468 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 C12orf42Q96LP6 360 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 ESYT1Q9BSJ8 1104 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 DSCC1Q9BVC3 393 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 ASCC2Q9H1I8 757 aaPredicted RBP11.69□□□□□ -0.54
CLN3-261ENST00000637686 KANSL2Q9H9L4 492 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 ARHGEF10LQ9HCE6 1279 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 PNMA3Q9UL41 463 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLN3-261ENST00000637686 TMX2Q9Y320 296 aa11.69□□□□□ -0.54
CLN3-261ENST00000637686 SGSM2O43147 1006 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 ECM2O94769 699 aaPredicted RBP11.68□□□□□ -0.54
CLN3-261ENST00000637686 TSPY3P0CV98 308 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 TSPY8P0CW00 308 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 VCAM1P19320 739 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 IRX3P78415 501 aaPredicted RBP11.68□□□□□ -0.54
CLN3-261ENST00000637686 CAP1Q01518 475 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 TFAP4Q01664 338 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 KIAA1755Q5JYT7 1200 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 MCOLN1Q9GZU1 580 aa11.68□□□□□ -0.54
CLN3-261ENST00000637686 UPF2Q9HAU5 1272 aaKnown RBP11.68□□□□□ -0.54
CLN3-261ENST00000637686 IGKV6D-41A0A0C4DH26 115 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 TSPY2A6NKD2 308 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L15C9J2P7 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L13C9JLJ4 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L11C9JVI0 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L18D6R9N7 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L22D6RA61 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L17D6RBQ6 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L19D6RCP7 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L20D6RJB6 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 ZNF213O14771 459 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 FGRP09769 529 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 BCRP11274 1271 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 LACTBP83111 547 aaPredicted RBP11.67□□□□□ -0.54
CLN3-261ENST00000637686 PTH1RQ03431 593 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 USP17L24Q0WX57 530 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 RRP12Q5JTH9 1297 aaKnown RBP11.67□□□□□ -0.54
CLN3-261ENST00000637686 ANKRD13CQ8N6S4 541 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 NEDD1Q8NHV4 660 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 CEP95Q96GE4 821 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 P2RX7Q99572 595 aaKnown RBP11.67□□□□□ -0.54
CLN3-261ENST00000637686 ARHGAP39Q9C0H5 1083 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms