RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HSPD1P10809 573 aaKnown RBP21.77■■□□□ 1.08
CLN3-259ENST00000637551 TAF1CQ15572 869 aaPredicted RBP21.77■■□□□ 1.08
CLN3-259ENST00000637551 DSCC1Q9BVC3 393 aa21.77■■□□□ 1.08
CLN3-259ENST00000637551 GPR25O00155 361 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 FGRP09769 529 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 PPARAQ07869 468 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 CRHR2Q13324 411 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 SLC4A8Q2Y0W8 1093 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 GPAT2Q6NUI2 795 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 KANSL2Q9H9L4 492 aa21.76■■□□□ 1.07
CLN3-259ENST00000637551 PDHXO00330 501 aa21.75■■□□□ 1.07
CLN3-259ENST00000637551 HOXA7P31268 230 aaPredicted RBP21.75■■□□□ 1.07
CLN3-259ENST00000637551 PKN2Q16513 984 aaKnown RBP21.75■■□□□ 1.07
CLN3-259ENST00000637551 USP17L2Q6R6M4 530 aa21.75■■□□□ 1.07
CLN3-259ENST00000637551 ZNF589Q86UQ0 364 aaPredicted RBP21.75■■□□□ 1.07
CLN3-259ENST00000637551 DYNLL2Q96FJ2 89 aa21.75■■□□□ 1.07
CLN3-259ENST00000637551 TMOD4Q9NZQ9 345 aa21.75■■□□□ 1.07
CLN3-259ENST00000637551 ADGRA2Q96PE1 1338 aa21.75■■□□□ 1.07
CLN3-259ENST00000637551 FKTNO75072 461 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 GUCY1A2P33402 732 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 JAG1P78504 1218 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 ARHGEF6Q15052 776 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 CWC27Q6UX04 472 aaKnown RBP21.74■■□□□ 1.07
CLN3-259ENST00000637551 CCDC129Q6ZRS4 1044 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 SLC44A5Q8NCS7 719 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 GTF3C2Q8WUA4 911 aaPredicted RBP21.74■■□□□ 1.07
CLN3-259ENST00000637551 LPAR1Q92633 364 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 MKNK2Q9HBH9 465 aa21.74■■□□□ 1.07
CLN3-259ENST00000637551 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.74■■□□□ 1.07
CLN3-259ENST00000637551 CYP2D7A0A087X1C5 515 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 MINDY4BA8MYZ0 360 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 ORC4O43929 436 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 FGAP02671 866 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 RASA1P20936 1047 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 CHMLP26374 656 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 MTMR2Q13614 643 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 RAB3GAP1Q15042 981 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 ARHGEF10LQ9HCE6 1279 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 CTNNA3Q9UI47 895 aa21.73■■□□□ 1.07
CLN3-259ENST00000637551 TBC1D8O95759 1140 aa21.72■■□□□ 1.07
CLN3-259ENST00000637551 GNRH1P01148 92 aa21.72■■□□□ 1.07
CLN3-259ENST00000637551 HMGCS2P54868 508 aa21.72■■□□□ 1.07
CLN3-259ENST00000637551 VPS53Q5VIR6 699 aa21.72■■□□□ 1.07
CLN3-259ENST00000637551 ERO1AQ96HE7 468 aa21.72■■□□□ 1.07
CLN3-259ENST00000637551 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-259ENST00000637551 GCLCP48506 637 aaPredicted RBP21.71■■□□□ 1.07
CLN3-259ENST00000637551 EVX2Q03828 476 aa21.71■■□□□ 1.07
CLN3-259ENST00000637551 ICA1Q05084 483 aa21.71■■□□□ 1.07
CLN3-259ENST00000637551 SEPT2Q15019 361 aa21.71■■□□□ 1.07
CLN3-259ENST00000637551 GADL1Q6ZQY3 521 aa21.71■■□□□ 1.07
CLN3-259ENST00000637551 ZNF444Q8N0Y2 327 aaPredicted RBP21.71■■□□□ 1.07
CLN3-259ENST00000637551 ZNF296Q8WUU4 475 aaPredicted RBP21.71■■□□□ 1.07
CLN3-259ENST00000637551 FEZ1Q99689 392 aa21.71■■□□□ 1.07
CLN3-259ENST00000637551 RNF41Q9H4P4 317 aaPredicted RBP21.71■■□□□ 1.07
CLN3-259ENST00000637551 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.71■■□□□ 1.07
CLN3-259ENST00000637551 TMX2Q9Y320 296 aa21.71■■□□□ 1.07
CLN3-259ENST00000637551 MPHOSPH10O00566 681 aaKnown RBP21.7■■□□□ 1.06
CLN3-259ENST00000637551 AKR1B1P15121 316 aa21.7■■□□□ 1.06
CLN3-259ENST00000637551 SP3Q02447 781 aa21.7■■□□□ 1.06
CLN3-259ENST00000637551 HABP4Q5JVS0 413 aaKnown RBP21.7■■□□□ 1.06
CLN3-259ENST00000637551 C17orf99Q6UX52 265 aa21.7■■□□□ 1.06
CLN3-259ENST00000637551 NYAP2Q9P242 653 aa21.7■■□□□ 1.06
CLN3-259ENST00000637551 IGKV6D-41A0A0C4DH26 115 aa21.69■■□□□ 1.06
CLN3-259ENST00000637551 SGSM2O43147 1006 aa21.69■■□□□ 1.06
CLN3-259ENST00000637551 OSBPP22059 807 aa21.69■■□□□ 1.06
CLN3-259ENST00000637551 CCDC84Q86UT8 332 aaPredicted RBP21.69■■□□□ 1.06
CLN3-259ENST00000637551 NEDD1Q8NHV4 660 aa21.69■■□□□ 1.06
CLN3-259ENST00000637551 MYH4Q9Y623 1939 aa21.68■■□□□ 1.06
CLN3-259ENST00000637551 SHROOM1Q2M3G4 852 aaPredicted RBP21.68■■□□□ 1.06
CLN3-259ENST00000637551 LBX2Q6XYB7 198 aa21.68■■□□□ 1.06
CLN3-259ENST00000637551 STAG1Q8WVM7 1258 aa21.68■■□□□ 1.06
CLN3-259ENST00000637551 EMILIN3Q9NT22 766 aa21.68■■□□□ 1.06
CLN3-259ENST00000637551 MYPNQ86TC9 1320 aa21.68■■□□□ 1.06
CLN3-259ENST00000637551 MKI67P46013 3256 aaKnown RBP21.67■■□□□ 1.06
CLN3-259ENST00000637551 BCRP11274 1271 aa21.67■■□□□ 1.06
CLN3-259ENST00000637551 FAM110CQ1W6H9 321 aa21.67■■□□□ 1.06
CLN3-259ENST00000637551 TREML2Q5T2D2 321 aa21.67■■□□□ 1.06
CLN3-259ENST00000637551 SMCR8Q8TEV9 937 aaPredicted RBP21.67■■□□□ 1.06
CLN3-259ENST00000637551 MKL1Q969V6 931 aa21.67■■□□□ 1.06
CLN3-259ENST00000637551 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.67■■□□□ 1.06
CLN3-259ENST00000637551 R3HDMLQ9H3Y0 253 aa21.67■■□□□ 1.06
CLN3-259ENST00000637551 USP17L15C9J2P7 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L13C9JLJ4 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L11C9JVI0 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L18D6R9N7 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L22D6RA61 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L17D6RBQ6 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L19D6RCP7 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L20D6RJB6 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 SMIM22K7EJ46 135 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 VCAM1P19320 739 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 IRX3P78415 501 aaPredicted RBP21.66■■□□□ 1.06
CLN3-259ENST00000637551 USP17L24Q0WX57 530 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 IMMTQ16891 758 aaKnown RBP21.66■■□□□ 1.06
CLN3-259ENST00000637551 AKNAD1Q5T1N1 836 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 CASC1Q6TDU7 716 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 ASCC2Q9H1I8 757 aaPredicted RBP21.66■■□□□ 1.06
CLN3-259ENST00000637551 VCPKMTQ9H867 229 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 GOPCQ9HD26 462 aa21.66■■□□□ 1.06
CLN3-259ENST00000637551 PARP14Q460N5 1801 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 3243.1 ms