RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 STX8Q9UNK0 236 aa19.61■□□□□ 0.73
CLN3-252ENST00000636907 DDX49Q9Y6V7 483 aaKnown RBP19.61■□□□□ 0.73
CLN3-252ENST00000636907 MYH8P13535 1937 aa19.61■□□□□ 0.73
CLN3-252ENST00000636907 PLIN4Q96Q06 1357 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 ENTPD3O75355 529 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 SLURP2P0DP57 97 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 AKR1B1P15121 316 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 GUCY1A2P33402 732 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 FUT2Q10981 343 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 TRIM22Q8IYM9 498 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 RGS22Q8NE09 1264 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 CTCFLQ8NI51 663 aaPredicted RBP19.6■□□□□ 0.73
CLN3-252ENST00000636907 TMEM47Q9BQJ4 181 aa19.6■□□□□ 0.73
CLN3-252ENST00000636907 KRT85P78386 507 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 TNIP1Q15025 636 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 KLHL40Q2TBA0 621 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 TMTC3Q6ZXV5 915 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 ZSCAN29Q8IWY8 852 aaPredicted RBP19.59■□□□□ 0.73
CLN3-252ENST00000636907 MTMR14Q8NCE2 650 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 CEP95Q96GE4 821 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 DNAJC18Q9H819 358 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 ATRNL1Q5VV63 1379 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 CLRN2A0PK11 232 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 GADD45BO75293 160 aaPredicted RBP19.59■□□□□ 0.73
CLN3-252ENST00000636907 DEXIO95424 95 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 GPT2Q8TD30 523 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 WASF1Q92558 559 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 RNF26Q9BY78 433 aaPredicted RBP19.59■□□□□ 0.73
CLN3-252ENST00000636907 FHDC1Q9C0D6 1143 aaPredicted RBP19.59■□□□□ 0.73
CLN3-252ENST00000636907 TMOD2Q9NZR1 351 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 PI4KBQ9UBF8 816 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 ZNF70Q9UC06 446 aaPredicted RBP19.59■□□□□ 0.73
CLN3-252ENST00000636907 TAOK2Q9UL54 1235 aa19.59■□□□□ 0.73
CLN3-252ENST00000636907 COL2A1P02458 1487 aaPredicted RBP19.58■□□□□ 0.73
CLN3-252ENST00000636907 NOVP48745 357 aa19.58■□□□□ 0.72
CLN3-252ENST00000636907 SPDYE2Q495Y8 402 aa19.58■□□□□ 0.72
CLN3-252ENST00000636907 KRT40Q6A162 431 aa19.58■□□□□ 0.72
CLN3-252ENST00000636907 ZBED3Q96IU2 234 aaPredicted RBP19.58■□□□□ 0.72
CLN3-252ENST00000636907 MAP3K14Q99558 947 aa19.58■□□□□ 0.72
CLN3-252ENST00000636907 GZF1Q9H116 711 aaPredicted RBP19.58■□□□□ 0.72
CLN3-252ENST00000636907 MYH15Q9Y2K3 1946 aa19.57■□□□□ 0.72
CLN3-252ENST00000636907 IGKV6D-41A0A0C4DH26 115 aa19.57■□□□□ 0.72
CLN3-252ENST00000636907 SHTN1A0MZ66 631 aa19.57■□□□□ 0.72
CLN3-252ENST00000636907 TCP10L2B9ZVM9 353 aa19.57■□□□□ 0.72
CLN3-252ENST00000636907 GRM4Q14833 912 aa19.57■□□□□ 0.72
CLN3-252ENST00000636907 CNTNAP5Q8WYK1 1306 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 FAM196BA6NMK8 535 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 FZD9O00144 591 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 PRPF3O43395 683 aaKnown RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 KIF5BP33176 963 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 CSPP1Q1MSJ5 1256 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 SRBD1Q8N5C6 995 aaKnown RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 MTMR4Q9NYA4 1195 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 TFIP11Q9UBB9 837 aaKnown RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 KIF28PB7ZC32 967 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 TOP1P11387 765 aaKnown RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 EIF6P56537 245 aaKnown RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 AKAP17AQ02040 695 aaKnown RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 KIF23Q02241 960 aaPredicted RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 FOXP4Q8IVH2 680 aaPredicted RBP19.56■□□□□ 0.72
CLN3-252ENST00000636907 MYOZ2Q9NPC6 264 aa19.56■□□□□ 0.72
CLN3-252ENST00000636907 GREB1LQ9C091 1923 aaPredicted RBP19.55■□□□□ 0.72
CLN3-252ENST00000636907 RPS12P25398 132 aaKnown RBP19.55■□□□□ 0.72
CLN3-252ENST00000636907 TRIM29Q14134 588 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 PKN1Q16512 942 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 METTL16Q86W50 562 aaKnown RBP19.55■□□□□ 0.72
CLN3-252ENST00000636907 STAG2Q8N3U4 1231 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 TRIM34Q9BYJ4 488 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 VEZTQ9HBM0 779 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 MAD2L2Q9UI95 211 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 MTMR7Q9Y216 660 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 V9GY48 417 aaPredicted RBP19.55■□□□□ 0.72
CLN3-252ENST00000636907 MYH6P13533 1939 aa19.55■□□□□ 0.72
CLN3-252ENST00000636907 CNTNAP1P78357 1384 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 MPHOSPH10O00566 681 aaKnown RBP19.54■□□□□ 0.72
CLN3-252ENST00000636907 WNT10BO00744 389 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 MBD3O95983 291 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 ZNF280AP59817 542 aaPredicted RBP19.54■□□□□ 0.72
CLN3-252ENST00000636907 GSE1Q14687 1217 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 NBPF9Q3BBW0 867 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 ILDR2Q71H61 639 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 CLEC10AQ8IUN9 316 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 CCDC17Q96LX7 622 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 CSRNP1Q96S65 589 aa19.54■□□□□ 0.72
CLN3-252ENST00000636907 SCAND2PQ9GZW5 306 aaPredicted RBP19.54■□□□□ 0.72
CLN3-252ENST00000636907 hCG_1642624A0A1W2PR95 340 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 TATDN1Q6P1N9 297 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 ARHGAP27Q6ZUM4 889 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 RASGRP2Q7LDG7 609 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 BRAPQ7Z569 592 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 LEO1Q8WVC0 666 aaPredicted RBP19.53■□□□□ 0.72
CLN3-252ENST00000636907 FAM151AQ8WW52 585 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 GJA3Q9Y6H8 435 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 ELP1O95163 1332 aa19.53■□□□□ 0.72
CLN3-252ENST00000636907 GMPSP49915 693 aaPredicted RBP19.52■□□□□ 0.72
CLN3-252ENST00000636907 MMP14P50281 582 aa19.52■□□□□ 0.72
CLN3-252ENST00000636907 UBE2HP62256 183 aa19.52■□□□□ 0.72
CLN3-252ENST00000636907 CERKLQ49MI3 558 aaPredicted RBP19.52■□□□□ 0.72
CLN3-252ENST00000636907 FKBP1CQ5VVH2 108 aa19.52■□□□□ 0.72
CLN3-252ENST00000636907 SPATA32Q96LK8 384 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms