RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TBC1D22AQ8WUA7 517 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 ZKSCAN5Q9Y2L8 839 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 CNTNAP5Q8WYK1 1306 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 ROBO3Q96MS0 1386 aa18.03■□□□□ 0.48
CLN3-251ENST00000636853 ATP2B1P20020 1258 aa18.02■□□□□ 0.48
CLN3-251ENST00000636853 PIBF1Q8WXW3 757 aa18.02■□□□□ 0.48
CLN3-251ENST00000636853 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.02■□□□□ 0.48
CLN3-251ENST00000636853 FAM205AQ6ZU69 1335 aa18.02■□□□□ 0.48
CLN3-251ENST00000636853 XBP1P17861 261 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 RXRBP28702 533 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 RHBDL3P58872 404 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 DOK7Q18PE1 504 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 ZNF444Q8N0Y2 327 aaPredicted RBP18.02■□□□□ 0.47
CLN3-251ENST00000636853 PKNOX2Q96KN3 472 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 ZC3H12CQ9C0D7 883 aaKnown RBP18.02■□□□□ 0.47
CLN3-251ENST00000636853 KAT14Q9H8E8 782 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 CABP5Q9NP86 173 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 PCDHB6Q9Y5E3 794 aa18.02■□□□□ 0.47
CLN3-251ENST00000636853 FAM205CA6NFA0 338 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 F8W031 263 aaPredicted RBP18.01■□□□□ 0.47
CLN3-251ENST00000636853 TSPY3P0CV98 308 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 TSPY8P0CW00 308 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 PDE6BP35913 854 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 FLAD1Q8NFF5 587 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 PHF20Q9BVI0 1012 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 COA1Q9GZY4 146 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 COL11A2P13942 1736 aaPredicted RBP18.01■□□□□ 0.47
CLN3-251ENST00000636853 GAKO14976 1311 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 FLT1P17948 1338 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 ALDH1B1P30837 517 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 SYKP43405 635 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 RILPL1Q5EBL4 403 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 DPP8Q6V1X1 898 aaPredicted RBP18.01■□□□□ 0.47
CLN3-251ENST00000636853 FAM163AQ96GL9 167 aaPredicted RBP18.01■□□□□ 0.47
CLN3-251ENST00000636853 ZNF830Q96NB3 372 aaPredicted RBP18.01■□□□□ 0.47
CLN3-251ENST00000636853 MXD3Q9BW11 206 aa18.01■□□□□ 0.47
CLN3-251ENST00000636853 KRT2P35908 639 aa18■□□□□ 0.47
CLN3-251ENST00000636853 IQCB1Q15051 598 aa18■□□□□ 0.47
CLN3-251ENST00000636853 EARS2Q5JPH6 523 aaKnown RBP18■□□□□ 0.47
CLN3-251ENST00000636853 SPECC1Q5M775 1068 aa18■□□□□ 0.47
CLN3-251ENST00000636853 DGKHQ86XP1 1220 aa18■□□□□ 0.47
CLN3-251ENST00000636853 CERS3Q8IU89 383 aa18■□□□□ 0.47
CLN3-251ENST00000636853 SLF2Q8IX21 1173 aa18■□□□□ 0.47
CLN3-251ENST00000636853 PNMA1Q8ND90 353 aa18■□□□□ 0.47
CLN3-251ENST00000636853 ZNF622Q969S3 477 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-251ENST00000636853 PDCL3Q9H2J4 239 aa18■□□□□ 0.47
CLN3-251ENST00000636853 ANO10Q9NW15 660 aa18■□□□□ 0.47
CLN3-251ENST00000636853 KIAA1468Q9P260 1216 aa18■□□□□ 0.47
CLN3-251ENST00000636853 HPSEQ9Y251 543 aa18■□□□□ 0.47
CLN3-251ENST00000636853 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-251ENST00000636853 CUTAO60888 179 aa18■□□□□ 0.47
CLN3-251ENST00000636853 VEGFAP15692 232 aaPredicted RBP18■□□□□ 0.47
CLN3-251ENST00000636853 PLCG2P16885 1265 aa18■□□□□ 0.47
CLN3-251ENST00000636853 RASA1P20936 1047 aa18■□□□□ 0.47
CLN3-251ENST00000636853 RESP18Q5W5W9 173 aa18■□□□□ 0.47
CLN3-251ENST00000636853 MASTLQ96GX5 879 aa18■□□□□ 0.47
CLN3-251ENST00000636853 MTMR7Q9Y216 660 aa18■□□□□ 0.47
CLN3-251ENST00000636853 DAGLAQ9Y4D2 1042 aa18■□□□□ 0.47
CLN3-251ENST00000636853 CAVIN2O95810 425 aa17.99■□□□□ 0.47
CLN3-251ENST00000636853 GRIN1Q05586 938 aa17.99■□□□□ 0.47
CLN3-251ENST00000636853 CERS5Q8N5B7 392 aa17.99■□□□□ 0.47
CLN3-251ENST00000636853 KRI1Q8N9T8 703 aaKnown RBP17.99■□□□□ 0.47
CLN3-251ENST00000636853 SPC24Q8NBT2 197 aa17.99■□□□□ 0.47
CLN3-251ENST00000636853 MYH1P12882 1939 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 OFD1O75665 1012 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 CDK8P49336 464 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 STAG2Q8N3U4 1231 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 ANKS1AQ92625 1134 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 KIF5BP33176 963 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 FBXO2Q9UK22 296 aaPredicted RBP17.98■□□□□ 0.47
CLN3-251ENST00000636853 STX8Q9UNK0 236 aa17.98■□□□□ 0.47
CLN3-251ENST00000636853 DDX60LQ5H9U9 1706 aaKnown RBP17.98■□□□□ 0.47
CLN3-251ENST00000636853 BIN1O00499 593 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 SCG2P13521 617 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 NPY5RQ15761 445 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 NOM1Q5C9Z4 860 aaKnown RBP17.97■□□□□ 0.47
CLN3-251ENST00000636853 C16orf86Q6ZW13 317 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 TTC12Q9H892 705 aaPredicted RBP17.97■□□□□ 0.47
CLN3-251ENST00000636853 TCP11L1Q9NUJ3 509 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 FAM237AA0A1B0GTK4 181 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 GOLGA6L19H0YKK7 550 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 PICALMQ13492 652 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.97■□□□□ 0.47
CLN3-251ENST00000636853 EYA3Q99504 573 aa17.97■□□□□ 0.47
CLN3-251ENST00000636853 TMX4Q9H1E5 349 aaPredicted RBP17.97■□□□□ 0.47
CLN3-251ENST00000636853 TTF2Q9UNY4 1162 aaKnown RBP17.97■□□□□ 0.47
CLN3-251ENST00000636853 G3V3G9 751 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 PTPREP23469 700 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 NT5C2P49902 561 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 PFKFB3Q16875 520 aaPredicted RBP17.96■□□□□ 0.47
CLN3-251ENST00000636853 DPCR1Q3MIW9 517 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 DCAF8Q5TAQ9 597 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 C2CD5Q86YS7 1000 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 DHX40Q8IX18 779 aaKnown RBP17.96■□□□□ 0.47
CLN3-251ENST00000636853 TIGD1Q96MW7 591 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 TMEM47Q9BQJ4 181 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 TRIM5Q9C035 493 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 ZNF287Q9HBT7 754 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 KCNH3Q9ULD8 1083 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 SNED1Q8TER0 1413 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms