RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 HIP1RO75146 1068 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 EEF1DP29692 281 aaKnown RBP6.61□□□□□ -1.35
SCN1A-212ENST00000636194 PSMD2Q13200 908 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 PLEKHM3Q6ZWE6 761 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 OR9Q1Q8NGQ5 310 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 CDKL2Q92772 493 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 PAPOLBQ9NRJ5 636 aaKnown RBP6.61□□□□□ -1.35
SCN1A-212ENST00000636194 STX18Q9P2W9 335 aaKnown RBP6.61□□□□□ -1.35
SCN1A-212ENST00000636194 TLDC2A0PJX2 215 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 ORC4O43929 436 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 SERPINB2P05120 415 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 KRT15P19012 456 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 OCRLQ01968 901 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 L3MBTL2Q969R5 705 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 BRD4O60885 1362 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-212ENST00000636194 ZNF233A6NK53 670 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 NR5A1Q13285 461 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 CNNM4Q6P4Q7 775 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 EYA3Q99504 573 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 VEZTQ9HBM0 779 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 ATP8B3O60423 1300 aa6.61□□□□□ -1.35
SCN1A-212ENST00000636194 PLEKHG3A1L390 1219 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 UQCRFS1P1P0C7P4 283 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 RANBP1P43487 201 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 RTN1Q16799 776 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ABI1Q8IZP0 508 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ZNF280CQ8ND82 737 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ST13P5Q8NFI4 369 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 MTBPQ96DY7 904 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 SETDB2Q96T68 719 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 TSKSQ9UJT2 592 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ATP5J2-PTCD1G3V325 749 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PTCD1O75127 700 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PYGMP11217 842 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ZFXP17010 805 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 KRT4P19013 534 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ECE1P42892 770 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 TYRO3Q06418 890 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 MRPL28Q13084 256 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PUM3Q15397 648 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 GRK7Q8WTQ7 553 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 GFM2Q969S9 779 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 SCYL1Q96KG9 808 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 SLC26A6Q9BXS9 759 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 TYW1Q9NV66 732 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 EPRSP07814 1512 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 SERPINB6P35237 376 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 MPNDQ8N594 471 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PHKBQ93100 1093 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 NLRP4Q96MN2 994 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 OLFML3Q9NRN5 406 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 CHCHD3Q9NX63 227 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PRR23D1E9PI22 279 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PRR23D2P0DMB1 279 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PRKAR2BP31323 418 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 STX1BP61266 288 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ASIC3Q9UHC3 531 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 WDR64B1ANS9 1081 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PTGS1P23219 599 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 PCYT1AP49585 367 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ITKQ08881 620 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 KLC3Q6P597 504 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 DTHD1Q6ZMT9 781 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 ENAHQ8N8S7 591 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 BTN2A2Q8WVV5 523 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 TRIM4Q9C037 500 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 H3BRJ5 948 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 TRIM59Q8IWR1 403 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 WDR48Q8TAF3 677 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 CCHCR1Q8TD31 782 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 CNOT7Q9UIV1 285 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 KIF1CO43896 1103 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 RNF40O75150 1001 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 MX1P20591 662 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 HOXA7P31268 230 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 USP48Q86UV5 1035 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 IQCDQ96DY2 449 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 MED10Q9BTT4 135 aa6.6□□□□□ -1.35
SCN1A-212ENST00000636194 CPSF3Q9UKF6 684 aaKnown RBP6.6□□□□□ -1.35
SCN1A-212ENST00000636194 CAMSAP2Q08AD1 1489 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 SOGA1O94964 1423 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 PSDA5PKW4 1024 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-212ENST00000636194 STXBP3O00186 592 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 NRG3P56975 720 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 HDDC2Q7Z4H3 204 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 TXNDC2Q86VQ3 553 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 AIPL1Q9NZN9 384 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 TRPC5Q9UL62 973 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-212ENST00000636194 MYH6P13533 1939 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 PLEKHH2Q8IVE3 1493 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 THAP12O43422 761 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 SNX1Q13596 522 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 ADALQ6DHV7 355 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 OTUD7BQ6GQQ9 843 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 HPDP32754 393 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-212ENST00000636194 NEK2P51955 445 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 RAB3GAP1Q15042 981 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 LRRC8BQ6P9F7 803 aa6.59□□□□□ -1.35
SCN1A-212ENST00000636194 SLC17A8Q8NDX2 589 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms