RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 A0A0D9SFI3 127 aa21.66■■□□□ 1.06
CLN3-243ENST00000635973 APPP05067 770 aa21.66■■□□□ 1.06
CLN3-243ENST00000635973 RRP1BQ14684 758 aaKnown RBP21.66■■□□□ 1.06
CLN3-243ENST00000635973 TTC6Q86TZ1 520 aa21.66■■□□□ 1.06
CLN3-243ENST00000635973 COA7Q96BR5 231 aa21.66■■□□□ 1.06
CLN3-243ENST00000635973 GINM1Q9NU53 330 aa21.66■■□□□ 1.06
CLN3-243ENST00000635973 GCLCP48506 637 aaPredicted RBP21.65■■□□□ 1.06
CLN3-243ENST00000635973 MTMR2Q13614 643 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 MCMDC2Q4G0Z9 681 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 CCDC129Q6ZRS4 1044 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 SLAIN1Q8ND83 568 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 NKX2-3Q8TAU0 364 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 WDR18Q9BV38 432 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 TAOK2Q9UL54 1235 aa21.65■■□□□ 1.06
CLN3-243ENST00000635973 BRCA2P51587 3418 aa21.64■■□□□ 1.06
CLN3-243ENST00000635973 DDX60LQ5H9U9 1706 aaKnown RBP21.64■■□□□ 1.06
CLN3-243ENST00000635973 GDF11O95390 407 aa21.64■■□□□ 1.05
CLN3-243ENST00000635973 TDO2P48775 406 aa21.64■■□□□ 1.05
CLN3-243ENST00000635973 IRX3P78415 501 aaPredicted RBP21.64■■□□□ 1.05
CLN3-243ENST00000635973 MTFR1Q15390 333 aa21.64■■□□□ 1.05
CLN3-243ENST00000635973 CWC27Q6UX04 472 aaKnown RBP21.64■■□□□ 1.05
CLN3-243ENST00000635973 NACAP1Q9BZK3 213 aa21.64■■□□□ 1.05
CLN3-243ENST00000635973 GABRQQ9UN88 632 aa21.64■■□□□ 1.05
CLN3-243ENST00000635973 C19orf81C9J6K1 198 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 ADCY3O60266 1144 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 FLT3LGP49771 235 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 BACE1P56817 501 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 FAM110CQ1W6H9 321 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 SH3D19Q5HYK7 790 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 METTL16Q86W50 562 aaKnown RBP21.63■■□□□ 1.05
CLN3-243ENST00000635973 RNF208Q9H0X6 261 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 DNAJC18Q9H819 358 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 SERPINB13Q9UIV8 391 aa21.63■■□□□ 1.05
CLN3-243ENST00000635973 MKI67P46013 3256 aaKnown RBP21.63■■□□□ 1.05
CLN3-243ENST00000635973 GSG1L2A8MUP6 293 aa21.62■■□□□ 1.05
CLN3-243ENST00000635973 USP17L10C9JJH3 530 aa21.62■■□□□ 1.05
CLN3-243ENST00000635973 CCL5P13501 91 aa21.62■■□□□ 1.05
CLN3-243ENST00000635973 MFAP1P55081 439 aaKnown RBP21.62■■□□□ 1.05
CLN3-243ENST00000635973 ASCC2Q9H1I8 757 aaPredicted RBP21.62■■□□□ 1.05
CLN3-243ENST00000635973 EHD4Q9H223 541 aa21.62■■□□□ 1.05
CLN3-243ENST00000635973 ARPP21Q9UBL0 812 aaPredicted RBP21.62■■□□□ 1.05
CLN3-243ENST00000635973 ZBTB21Q9ULJ3 1066 aa21.62■■□□□ 1.05
CLN3-243ENST00000635973 CCDC171Q6TFL3 1326 aa21.61■■□□□ 1.05
CLN3-243ENST00000635973 BAZ2AQ9UIF9 1905 aaKnown RBP21.61■■□□□ 1.05
CLN3-243ENST00000635973 PATL2C9JE40 543 aaKnown RBP21.61■■□□□ 1.05
CLN3-243ENST00000635973 USP17L12C9JPN9 530 aa21.61■■□□□ 1.05
CLN3-243ENST00000635973 USP17L21D6R901 530 aa21.61■■□□□ 1.05
CLN3-243ENST00000635973 CYP2D6P10635 497 aa21.61■■□□□ 1.05
CLN3-243ENST00000635973 GIMAP6Q6P9H5 292 aa21.61■■□□□ 1.05
CLN3-243ENST00000635973 DOCK3Q8IZD9 2030 aa21.6■■□□□ 1.05
CLN3-243ENST00000635973 PLCD1P51178 756 aa21.6■■□□□ 1.05
CLN3-243ENST00000635973 ZNF589Q86UQ0 364 aaPredicted RBP21.6■■□□□ 1.05
CLN3-243ENST00000635973 FEZ1Q99689 392 aa21.6■■□□□ 1.05
CLN3-243ENST00000635973 NAPBQ9H115 298 aa21.6■■□□□ 1.05
CLN3-243ENST00000635973 EPB41L4AQ9HCS5 686 aaPredicted RBP21.6■■□□□ 1.05
CLN3-243ENST00000635973 CYP2D7A0A087X1C5 515 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 GH2P01242 217 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 GJB1P08034 283 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 JAG1P78504 1218 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 IRF5Q13568 498 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 BMP2KLQ5H9B9 411 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 CTR9Q6PD62 1173 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 IFNL3Q8IZI9 196 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 PXYLP1Q8TE99 480 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 RUFY2Q8WXA3 655 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 CABP5Q9NP86 173 aa21.59■■□□□ 1.05
CLN3-243ENST00000635973 MINDY4BA8MYZ0 360 aa21.58■■□□□ 1.05
CLN3-243ENST00000635973 ELNP15502 786 aa21.58■■□□□ 1.05
CLN3-243ENST00000635973 RAB3GAP1Q15042 981 aa21.58■■□□□ 1.05
CLN3-243ENST00000635973 CERKLQ49MI3 558 aaPredicted RBP21.58■■□□□ 1.05
CLN3-243ENST00000635973 C12orf60Q5U649 245 aa21.58■■□□□ 1.05
CLN3-243ENST00000635973 USP17L2Q6R6M4 530 aa21.58■■□□□ 1.05
CLN3-243ENST00000635973 CCAR1Q8IX12 1150 aaKnown RBP21.58■■□□□ 1.05
CLN3-243ENST00000635973 INHAP05111 366 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 HOXA7P31268 230 aaPredicted RBP21.57■■□□□ 1.04
CLN3-243ENST00000635973 GJA8P48165 433 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 EVX2Q03828 476 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 ABCB5Q2M3G0 1257 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 SHROOM1Q2M3G4 852 aaPredicted RBP21.57■■□□□ 1.04
CLN3-243ENST00000635973 HABP4Q5JVS0 413 aaKnown RBP21.57■■□□□ 1.04
CLN3-243ENST00000635973 VPS53Q5VIR6 699 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 TATDN1Q6P1N9 297 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 SWAP70Q9UH65 585 aa21.57■■□□□ 1.04
CLN3-243ENST00000635973 RAD50Q92878 1312 aa21.56■■□□□ 1.04
CLN3-243ENST00000635973 CHMLP26374 656 aa21.56■■□□□ 1.04
CLN3-243ENST00000635973 SBK1Q52WX2 424 aa21.56■■□□□ 1.04
CLN3-243ENST00000635973 DYNLL2Q96FJ2 89 aa21.56■■□□□ 1.04
CLN3-243ENST00000635973 P2RX7Q99572 595 aaKnown RBP21.56■■□□□ 1.04
CLN3-243ENST00000635973 UNC93B1Q9H1C4 597 aa21.56■■□□□ 1.04
CLN3-243ENST00000635973 HERVK_113P62684 666 aa21.55■■□□□ 1.04
CLN3-243ENST00000635973 ZYXQ15942 572 aaKnown RBP21.55■■□□□ 1.04
CLN3-243ENST00000635973 SLC44A5Q8NCS7 719 aa21.55■■□□□ 1.04
CLN3-243ENST00000635973 GPRC5AQ8NFJ5 357 aa21.55■■□□□ 1.04
CLN3-243ENST00000635973 MYH8P13535 1937 aa21.55■■□□□ 1.04
CLN3-243ENST00000635973 SLC3A2P08195 630 aaKnown RBP21.54■■□□□ 1.04
CLN3-243ENST00000635973 HSPD1P10809 573 aaKnown RBP21.54■■□□□ 1.04
CLN3-243ENST00000635973 SHMT1P34896 483 aa21.54■■□□□ 1.04
CLN3-243ENST00000635973 USP14P54578 494 aa21.54■■□□□ 1.04
CLN3-243ENST00000635973 GABPAQ06546 454 aa21.54■■□□□ 1.04
CLN3-243ENST00000635973 STK11IPQ8N1F8 1099 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms