RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FAM196BA6NMK8 535 aa16.53■□□□□ 0.24
CLN3-242ENST00000635958 PNMA8AQ86V59 439 aaPredicted RBP16.53■□□□□ 0.24
CLN3-242ENST00000635958 NECAB1Q8N987 351 aa16.53■□□□□ 0.24
CLN3-242ENST00000635958 HOOK2Q96ED9 719 aa16.53■□□□□ 0.24
CLN3-242ENST00000635958 SCAF8Q9UPN6 1271 aaKnown RBP16.53■□□□□ 0.24
CLN3-242ENST00000635958 SLC12A7Q9Y666 1083 aa16.53■□□□□ 0.24
CLN3-242ENST00000635958 NID2Q14112 1375 aa16.53■□□□□ 0.24
CLN3-242ENST00000635958 GREB1LQ9C091 1923 aaPredicted RBP16.52■□□□□ 0.24
CLN3-242ENST00000635958 HSP90AA1P07900 732 aaKnown RBP16.52■□□□□ 0.24
CLN3-242ENST00000635958 SCRN1Q12765 414 aa16.52■□□□□ 0.24
CLN3-242ENST00000635958 PPP4R3BQ5MIZ7 849 aa16.52■□□□□ 0.24
CLN3-242ENST00000635958 NFXL1Q6ZNB6 911 aa16.52■□□□□ 0.24
CLN3-242ENST00000635958 DCPSQ96C86 337 aaKnown RBP16.52■□□□□ 0.24
CLN3-242ENST00000635958 MTMR4Q9NYA4 1195 aa16.52■□□□□ 0.24
CLN3-242ENST00000635958 ZBTB43O43298 467 aa16.52■□□□□ 0.23
CLN3-242ENST00000635958 RRP1BQ14684 758 aaKnown RBP16.52■□□□□ 0.23
CLN3-242ENST00000635958 NBPF12Q5TAG4 269 aaPredicted RBP16.52■□□□□ 0.23
CLN3-242ENST00000635958 SYNE3Q6ZMZ3 975 aa16.52■□□□□ 0.23
CLN3-242ENST00000635958 CCDC83Q8IWF9 413 aa16.52■□□□□ 0.23
CLN3-242ENST00000635958 ZNF654Q8IZM8 581 aa16.52■□□□□ 0.23
CLN3-242ENST00000635958 CEP95Q96GE4 821 aa16.52■□□□□ 0.23
CLN3-242ENST00000635958 CWC22Q9HCG8 908 aaKnown RBP16.52■□□□□ 0.23
CLN3-242ENST00000635958 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.52■□□□□ 0.23
CLN3-242ENST00000635958 GOLGA8BA8MQT2 603 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 PHF20L1A8MW92 1017 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 TROAPQ12815 778 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 STK3Q13188 491 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 PPP2R5BQ15173 497 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 ABCB5Q2M3G0 1257 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 TMEM179Q6ZVK1 233 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 MIGA2Q7L4E1 593 aa16.51■□□□□ 0.23
CLN3-242ENST00000635958 LLPHQ9BRT6 129 aaKnown RBP16.51■□□□□ 0.23
CLN3-242ENST00000635958 CLCN1P35523 988 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 CATIPQ7Z7H3 387 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 SPRYD3Q8NCJ5 442 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 TNPO1Q92973 898 aaKnown RBP16.5■□□□□ 0.23
CLN3-242ENST00000635958 MAP3K14Q99558 947 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 TMEM47Q9BQJ4 181 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 KANSL2Q9H9L4 492 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 GRPEL1Q9HAV7 217 aa16.5■□□□□ 0.23
CLN3-242ENST00000635958 DHX16O60231 1041 aaKnown RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 DDAH1O94760 285 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 CALM1P0DP23 149 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 CALM2P0DP24 149 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 CALM3P0DP25 149 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 TOP1P11387 765 aaKnown RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 VEGFAP15692 232 aaPredicted RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 GUCY1A2P33402 732 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 METAP2P50579 478 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLN3-242ENST00000635958 CCT2P78371 535 aaKnown RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 JAG1P78504 1218 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 SUPT20HL1Q3ZLR7 823 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 DCAF15Q66K64 600 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 SULF1Q8IWU6 871 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 MKL1Q969V6 931 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 KAT14Q9H8E8 782 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 FAM217BQ9NTX9 383 aaPredicted RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 GINM1Q9NU53 330 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 ZNF112Q9UJU3 913 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 MPHOSPH10O00566 681 aaKnown RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 TTLL1O95922 423 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 CAP2P40123 477 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 NUCB2P80303 420 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 FANCBQ8NB91 859 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 SMARCC2Q8TAQ2 1214 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 NCOA5Q9HCD5 579 aaKnown RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 CABP5Q9NP86 173 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 NYAP2Q9P242 653 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 NAP1L2Q9ULW6 460 aaPredicted RBP16.49■□□□□ 0.23
CLN3-242ENST00000635958 STX8Q9UNK0 236 aa16.49■□□□□ 0.23
CLN3-242ENST00000635958 CTDNEP1O95476 244 aa16.48■□□□□ 0.23
CLN3-242ENST00000635958 KRT26Q7Z3Y9 468 aa16.48■□□□□ 0.23
CLN3-242ENST00000635958 MICU3Q86XE3 530 aa16.48■□□□□ 0.23
CLN3-242ENST00000635958 SIAH1Q8IUQ4 282 aa16.48■□□□□ 0.23
CLN3-242ENST00000635958 PNMA1Q8ND90 353 aa16.48■□□□□ 0.23
CLN3-242ENST00000635958 FOXD4L1Q9NU39 408 aa16.48■□□□□ 0.23
CLN3-242ENST00000635958 CCDC196A0A1B0GTZ2 297 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 GOLGA8AA7E2F4 631 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 GDF11O95390 407 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 GH2P01242 217 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 CDC27P30260 824 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 SEPT2Q15019 361 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 SHROOM1Q2M3G4 852 aaPredicted RBP16.47■□□□□ 0.23
CLN3-242ENST00000635958 NSUN7Q8NE18 718 aaKnown RBP16.47■□□□□ 0.23
CLN3-242ENST00000635958 MYL10Q9BUA6 226 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 ZNF341Q9BYN7 854 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 CTNND1O60716 968 aaKnown RBP16.47■□□□□ 0.23
CLN3-242ENST00000635958 ADD1P35611 737 aaKnown RBP16.47■□□□□ 0.23
CLN3-242ENST00000635958 NTRK3Q16288 839 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 PRAMEF18Q5VWM3 479 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 ZNF526Q8TF50 670 aaPredicted RBP16.47■□□□□ 0.23
CLN3-242ENST00000635958 RRAGCQ9HB90 399 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 GPBP1L1Q9HC44 474 aaPredicted RBP16.47■□□□□ 0.23
CLN3-242ENST00000635958 CLIP2Q9UDT6 1046 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 ZBTB21Q9ULJ3 1066 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 SYNPO2Q9UMS6 1093 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 SMC3Q9UQE7 1217 aa16.47■□□□□ 0.23
CLN3-242ENST00000635958 ASNSP08243 561 aa16.46■□□□□ 0.23
CLN3-242ENST00000635958 RXRAP19793 462 aa16.46■□□□□ 0.23
CLN3-242ENST00000635958 RTN1Q16799 776 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms