RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 USP17L17D6RBQ6 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L19D6RCP7 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L20D6RJB6 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 CNMDO75829 334 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 CYP2E1P05181 493 aaPredicted RBP17.98■□□□□ 0.47
PNKP-218ENST00000625299 RARSP54136 660 aaKnown RBP17.98■□□□□ 0.47
PNKP-218ENST00000625299 ATP2B2Q01814 1243 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 USP17L24Q0WX57 530 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 OS9Q13438 667 aaPredicted RBP17.98■□□□□ 0.47
PNKP-218ENST00000625299 RAB3GAP1Q15042 981 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 DDX20Q9UHI6 824 aaKnown RBP17.98■□□□□ 0.47
PNKP-218ENST00000625299 RABGAP1Q9Y3P9 1069 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 IVNS1ABPQ9Y6Y0 642 aa17.98■□□□□ 0.47
PNKP-218ENST00000625299 TNNI3KQ59H18 835 aa17.97■□□□□ 0.47
PNKP-218ENST00000625299 ZNF697Q5TEC3 545 aa17.97■□□□□ 0.47
PNKP-218ENST00000625299 FPGT-TNNI3KV9GXZ4 949 aa17.97■□□□□ 0.47
PNKP-218ENST00000625299 SLC15A5A6NIM6 579 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 POTEB2H3BUK9 544 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 PTPREP23469 700 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 CYP2C19P33261 490 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 ZAP70P43403 619 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 USP5P45974 858 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 RTP1P59025 263 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 MIGA1Q8NAN2 632 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 ARHGAP45Q92619 1136 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 LPAR1Q92633 364 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 C12orf42Q96LP6 360 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 PIH1D3Q9NQM4 214 aaKnown RBP17.96■□□□□ 0.47
PNKP-218ENST00000625299 TNNQ9UQP3 1299 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 ATP11BQ9Y2G3 1177 aa17.96■□□□□ 0.47
PNKP-218ENST00000625299 LTBP2Q14767 1821 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 MSCO60682 206 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 MYCNP04198 464 aaPredicted RBP17.95■□□□□ 0.46
PNKP-218ENST00000625299 VCAM1P19320 739 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 CYP7A1P22680 504 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 FAM109BQ6ICB4 259 aaPredicted RBP17.95■□□□□ 0.46
PNKP-218ENST00000625299 CATSPERGQ6ZRH7 1159 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 NPLOC4Q8TAT6 608 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 FRAT1Q92837 279 aaPredicted RBP17.95■□□□□ 0.46
PNKP-218ENST00000625299 PRDM5Q9NQX1 630 aaPredicted RBP17.95■□□□□ 0.46
PNKP-218ENST00000625299 BTBD7Q9P203 1132 aa17.95■□□□□ 0.46
PNKP-218ENST00000625299 EYSQ5T1H1 3165 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 DNM1LO00429 736 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 IDH1O75874 414 aaKnown RBP17.94■□□□□ 0.46
PNKP-218ENST00000625299 USP14P54578 494 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 GJC2Q5T442 439 aaPredicted RBP17.94■□□□□ 0.46
PNKP-218ENST00000625299 ANO1Q5XXA6 986 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 ACER1Q8TDN7 264 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 CLUAP1Q96AJ1 413 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 VCANP13611 3396 aa17.94■□□□□ 0.46
PNKP-218ENST00000625299 TRIM27P14373 513 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 GRB14Q14449 540 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 ABCB5Q2M3G0 1257 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 CERKLQ49MI3 558 aaPredicted RBP17.93■□□□□ 0.46
PNKP-218ENST00000625299 TATDN1Q6P1N9 297 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 TRPV1Q8NER1 839 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 RPAP3Q9H6T3 665 aaPredicted RBP17.93■□□□□ 0.46
PNKP-218ENST00000625299 GPR108Q9NPR9 543 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 SERPINB13Q9UIV8 391 aa17.93■□□□□ 0.46
PNKP-218ENST00000625299 SPDYE16A6NNV3 312 aaPredicted RBP17.92■□□□□ 0.46
PNKP-218ENST00000625299 IPO8O15397 1037 aaKnown RBP17.92■□□□□ 0.46
PNKP-218ENST00000625299 DPP9Q86TI2 863 aa17.92■□□□□ 0.46
PNKP-218ENST00000625299 MAGEB6Q8N7X4 407 aa17.92■□□□□ 0.46
PNKP-218ENST00000625299 KIAA1683Q9H0B3 1180 aa17.92■□□□□ 0.46
PNKP-218ENST00000625299 CABP5Q9NP86 173 aa17.92■□□□□ 0.46
PNKP-218ENST00000625299 RLFQ13129 1914 aa17.92■□□□□ 0.46
PNKP-218ENST00000625299 KBTBD13C9JR72 458 aa17.91■□□□□ 0.46
PNKP-218ENST00000625299 SURF6O75683 361 aaKnown RBP17.91■□□□□ 0.46
PNKP-218ENST00000625299 HOXC6P09630 235 aa17.91■□□□□ 0.46
PNKP-218ENST00000625299 CYBAP13498 195 aa17.91■□□□□ 0.46
PNKP-218ENST00000625299 SHHQ15465 462 aa17.91■□□□□ 0.46
PNKP-218ENST00000625299 CDX2Q99626 313 aaPredicted RBP17.91■□□□□ 0.46
PNKP-218ENST00000625299 TLR7Q9NYK1 1049 aaKnown RBP17.91■□□□□ 0.46
PNKP-218ENST00000625299 C9orf50Q5SZB4 431 aa17.9■□□□□ 0.46
PNKP-218ENST00000625299 LBX2Q6XYB7 198 aa17.9■□□□□ 0.46
PNKP-218ENST00000625299 TTC6Q86TZ1 520 aa17.9■□□□□ 0.46
PNKP-218ENST00000625299 ARRDC4Q8NCT1 418 aa17.9■□□□□ 0.46
PNKP-218ENST00000625299 MAFAQ8NHW3 353 aaPredicted RBP17.9■□□□□ 0.46
PNKP-218ENST00000625299 CCDC8Q9H0W5 538 aaPredicted RBP17.9■□□□□ 0.46
PNKP-218ENST00000625299 EHD4Q9H223 541 aa17.9■□□□□ 0.46
PNKP-218ENST00000625299 DBNLQ9UJU6 430 aaKnown RBP17.9■□□□□ 0.46
PNKP-218ENST00000625299 NAV1Q8NEY1 1877 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 BCAR3O75815 825 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 ADORA2AP29274 412 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 POLA2Q14181 598 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 TRIM60Q495X7 471 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 SLC39A5Q6ZMH5 540 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 BADQ92934 168 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 ZNF512BQ96KM6 892 aaPredicted RBP17.89■□□□□ 0.45
PNKP-218ENST00000625299 TANGO6Q9C0B7 1094 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 C1orf115Q9H7X2 142 aa17.89■□□□□ 0.45
PNKP-218ENST00000625299 CDH23Q9H251 3354 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 MPHOSPH10O00566 681 aaKnown RBP17.88■□□□□ 0.45
PNKP-218ENST00000625299 SHMT1P34896 483 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 SEPT2Q15019 361 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 CERS3Q8IU89 383 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 TMEM57Q8N5G2 664 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 FERMT2Q96AC1 680 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 MOV10L1Q9BXT6 1211 aaKnown RBP17.88■□□□□ 0.45
PNKP-218ENST00000625299 SEMA6BQ9H3T3 888 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms