RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 RTEL1Q9NZ71 1219 aa20.28■□□□□ 0.84
PCF11-207ENST00000624931 SUGT1Q9Y2Z0 365 aa20.28■□□□□ 0.84
PCF11-207ENST00000624931 DDX60LQ5H9U9 1706 aaKnown RBP20.28■□□□□ 0.84
PCF11-207ENST00000624931 CCDC69A6NI79 296 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 USP17L12C9JPN9 530 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 USP17L21D6R901 530 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 PRC1O43663 620 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 USP17L8P0C7I0 530 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 USP5P45974 858 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 RHBDL3P58872 404 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 ADALQ6DHV7 355 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 MAPKAPK5Q8IW41 473 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 DHX40Q8IX18 779 aaKnown RBP20.27■□□□□ 0.84
PCF11-207ENST00000624931 TGFBRAP1Q8WUH2 860 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 MRPS27Q92552 414 aaKnown RBP20.27■□□□□ 0.84
PCF11-207ENST00000624931 DDX11Q96FC9 970 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 TAOK3Q9H2K8 898 aa20.27■□□□□ 0.84
PCF11-207ENST00000624931 CCP110O43303 1012 aa20.27■□□□□ 0.83
PCF11-207ENST00000624931 ZRSR1Q15695 479 aaKnown RBP20.27■□□□□ 0.83
PCF11-207ENST00000624931 AKNAD1Q5T1N1 836 aa20.27■□□□□ 0.83
PCF11-207ENST00000624931 CREBRFQ8IUR6 639 aa20.27■□□□□ 0.83
PCF11-207ENST00000624931 TEX11Q8IYF3 940 aa20.27■□□□□ 0.83
PCF11-207ENST00000624931 FAM163AQ96GL9 167 aaPredicted RBP20.27■□□□□ 0.83
PCF11-207ENST00000624931 ARFGEF1Q9Y6D6 1849 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 SPDYE4A6NLX3 237 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 EVCP57679 992 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 RRP12Q5JTH9 1297 aaKnown RBP20.26■□□□□ 0.83
PCF11-207ENST00000624931 SLF2Q8IX21 1173 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 CCAR2Q8N163 923 aaKnown RBP20.26■□□□□ 0.83
PCF11-207ENST00000624931 FSIP1Q8NA03 581 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 KCNG4Q8TDN1 519 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 STAG1Q8WVM7 1258 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 FHDC1Q9C0D6 1143 aaPredicted RBP20.26■□□□□ 0.83
PCF11-207ENST00000624931 ATP8A2Q9NTI2 1148 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 MCM9Q9NXL9 1143 aa20.26■□□□□ 0.83
PCF11-207ENST00000624931 MKRN1Q9UHC7 482 aaKnown RBP20.26■□□□□ 0.83
PCF11-207ENST00000624931 SAP30BPQ9UHR5 308 aaKnown RBP20.26■□□□□ 0.83
PCF11-207ENST00000624931 FOCADQ5VW36 1801 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 DHX16O60231 1041 aaKnown RBP20.25■□□□□ 0.83
PCF11-207ENST00000624931 CRKP46108 304 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 PRELPP51888 382 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 CCZ1BP86790 482 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 CCZ1P86791 482 aaPredicted RBP20.25■□□□□ 0.83
PCF11-207ENST00000624931 APOBRQ0VD83 1088 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 NIM1KQ8IY84 436 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 USP28Q96RU2 1077 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 TOMM22Q9NS69 142 aa20.25■□□□□ 0.83
PCF11-207ENST00000624931 PSMD14O00487 310 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 YEATS4O95619 227 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 ME1P48163 572 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 FKBP1AP62942 108 aaKnown RBP20.24■□□□□ 0.83
PCF11-207ENST00000624931 TRDNQ13061 729 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 GOLPH3LQ9H4A5 285 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 ANAPC4Q9UJX5 808 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 PRDM1O75626 825 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 SLU7O95391 586 aaKnown RBP20.24■□□□□ 0.83
PCF11-207ENST00000624931 CTDNEP1O95476 244 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 MFSD6Q6ZSS7 791 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 FMR1NBQ8N0W7 255 aaPredicted RBP20.24■□□□□ 0.83
PCF11-207ENST00000624931 TEKT1Q969V4 418 aa20.24■□□□□ 0.83
PCF11-207ENST00000624931 FLT1P17948 1338 aa20.23■□□□□ 0.83
PCF11-207ENST00000624931 BRAPQ7Z569 592 aa20.23■□□□□ 0.83
PCF11-207ENST00000624931 KRT222Q8N1A0 295 aa20.23■□□□□ 0.83
PCF11-207ENST00000624931 SDF4Q9BRK5 362 aa20.23■□□□□ 0.83
PCF11-207ENST00000624931 SENP2Q9HC62 589 aa20.23■□□□□ 0.83
PCF11-207ENST00000624931 ECM29Q5VYK3 1845 aa20.23■□□□□ 0.83
PCF11-207ENST00000624931 PDIA3P30101 505 aaKnown RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 PICALMQ13492 652 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 APOBEC3HQ6NTF7 200 aaKnown RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 ZNF592Q92610 1267 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 ARPP21Q9UBL0 812 aaPredicted RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 ZNRF3Q9ULT6 936 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 ZBTB12Q9Y330 459 aaPredicted RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 MYH1P12882 1939 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 MYO1BO43795 1136 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 CEBPZQ03701 1054 aaKnown RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 CDC42EP5Q6NZY7 148 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 RSBN1LQ6PCB5 846 aaPredicted RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 RAB11FIP4Q86YS3 637 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 DYNLL2Q96FJ2 89 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 ZKSCAN3Q9BRR0 538 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 DDX4Q9NQI0 724 aaKnown RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 USP40Q9NVE5 1235 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 POLR3EQ9NVU0 708 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 KIAA1468Q9P260 1216 aa20.22■□□□□ 0.83
PCF11-207ENST00000624931 ZHX1Q9UKY1 873 aaPredicted RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 NAP1L2Q9ULW6 460 aaPredicted RBP20.22■□□□□ 0.83
PCF11-207ENST00000624931 PLCG2P16885 1265 aa20.21■□□□□ 0.83
PCF11-207ENST00000624931 RBM5P52756 815 aaKnown RBP eCLIP20.21■□□□□ 0.832e-6■■□□□ 12.9
PCF11-207ENST00000624931 CACNB3P54284 484 aa20.21■□□□□ 0.83
PCF11-207ENST00000624931 SBK1Q52WX2 424 aa20.21■□□□□ 0.83
PCF11-207ENST00000624931 HHIPL2Q6UWX4 724 aa20.21■□□□□ 0.83
PCF11-207ENST00000624931 AOPEPQ8N6M6 819 aa20.21■□□□□ 0.83
PCF11-207ENST00000624931 ZSWIM5Q9P217 1185 aa20.21■□□□□ 0.83
PCF11-207ENST00000624931 SH2B2O14492 632 aaPredicted RBP20.2■□□□□ 0.82
PCF11-207ENST00000624931 SF3A1Q15459 793 aaKnown RBP20.2■□□□□ 0.82
PCF11-207ENST00000624931 C12orf60Q5U649 245 aa20.2■□□□□ 0.82
PCF11-207ENST00000624931 FILIP1Q7Z7B0 1213 aa20.2■□□□□ 0.82
PCF11-207ENST00000624931 KRT23Q9C075 422 aa20.2■□□□□ 0.82
PCF11-207ENST00000624931 VPS33BQ9H267 617 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms