RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 DNAJC2Q99543 621 aaKnown RBP19.11■□□□□ 0.65
SHKBP1-228ENST00000602239 NUDT12Q9BQG2 462 aa19.11■□□□□ 0.65
SHKBP1-228ENST00000602239 NR2E3Q9Y5X4 410 aa19.11■□□□□ 0.65
SHKBP1-228ENST00000602239 EVI5O60447 810 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 CNMDO75829 334 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 IFIT2P09913 472 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 MNX1P50219 401 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 GABPAQ06546 454 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 SDR42E1Q8WUS8 393 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 FEZ1Q99689 392 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 KIAA1683Q9H0B3 1180 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 PRO3102Q9H379 93 aa19.1■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L15C9J2P7 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L13C9JLJ4 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L11C9JVI0 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L18D6R9N7 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L22D6RA61 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L17D6RBQ6 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L19D6RCP7 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L20D6RJB6 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 XRCC5P13010 732 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 CAPN2P17655 700 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 MAPK4P31152 587 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 USP17L24Q0WX57 530 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 CCL14Q16627 93 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 MAP3K21Q5TCX8 1036 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 CATSPERGQ6ZRH7 1159 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 GPR142Q7Z601 462 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 NECAB2Q7Z6G3 386 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 CABP5Q9NP86 173 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 DDX19BQ9UMR2 479 aa19.09■□□□□ 0.65
SHKBP1-228ENST00000602239 HMMRO75330 724 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 CHGBP05060 677 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 CYP2D6P10635 497 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 PRKAR2AP13861 404 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 VCAM1P19320 739 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 SEPT2Q15019 361 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 MORN1Q5T089 497 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 PLEKHH3Q7Z736 793 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 CCAR1Q8IX12 1150 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 LCORLQ8N3X6 602 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 CRNKL1Q9BZJ0 848 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 BOLA2Q9H3K6 86 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 DCP1AQ9NPI6 582 aaPredicted RBP19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 MCM9Q9NXL9 1143 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 RABGAP1Q9Y3P9 1069 aa19.08■□□□□ 0.64
SHKBP1-228ENST00000602239 A0A1W2PRG0 241 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 RAB11FIP3O75154 756 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 CACNB2Q08289 660 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 PDE3AQ14432 1141 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 C20orf194Q5TEA3 1177 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 SLC44A5Q8NCS7 719 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 GTF3C2Q8WUA4 911 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 SOCS4Q8WXH5 440 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 ARMT1Q9H993 441 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 BTBD7Q9P203 1132 aa19.07■□□□□ 0.64
SHKBP1-228ENST00000602239 SMIM22K7EJ46 135 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 PRKAB2O43741 272 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 USP14P54578 494 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 ANKLE1Q8NAG6 615 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 RPAP3Q9H6T3 665 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 STAP2Q9UGK3 403 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 RCAN3Q9UKA8 241 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 OGDHLQ9ULD0 1010 aa19.06■□□□□ 0.64
SHKBP1-228ENST00000602239 DDX60LQ5H9U9 1706 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 MPHOSPH10O00566 681 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 ZKSCAN1P17029 563 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 ATP5JP18859 108 aa19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 DYNLL2Q96FJ2 89 aa19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 NBPF3Q9H094 633 aa19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 PAG1Q9NWQ8 432 aa19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 ALPK3Q96L96 1907 aa19.05■□□□□ 0.64
SHKBP1-228ENST00000602239 CCND3P30281 292 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-228ENST00000602239 ADD2P35612 726 aa19.04■□□□□ 0.64
SHKBP1-228ENST00000602239 RGS2P41220 211 aa19.04■□□□□ 0.64
SHKBP1-228ENST00000602239 KIAA1755Q5JYT7 1200 aa19.04■□□□□ 0.64
SHKBP1-228ENST00000602239 LHX8Q68G74 356 aa19.04■□□□□ 0.64
SHKBP1-228ENST00000602239 SPDYE16A6NNV3 312 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 SMARCA5O60264 1052 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 MBD4O95243 580 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 MAP2K5Q13163 448 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 WDR78Q5VTH9 848 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 LBX2Q6XYB7 198 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 SIAH1Q8IUQ4 282 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 TRMT44Q8IYL2 757 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 C7orf61Q8IZ16 206 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 HAUS7Q99871 368 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 FLRT1Q9NZU1 646 aa19.03■□□□□ 0.64
SHKBP1-228ENST00000602239 CYP2D7A0A087X1C5 515 aa19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 PTPREP23469 700 aa19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 CCNA1P78396 465 aa19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 APBA2Q99767 749 aa19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 C11orf49Q9H6J7 331 aa19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 CWC22Q9HCG8 908 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 NAV1Q8NEY1 1877 aa19.02■□□□□ 0.64
SHKBP1-228ENST00000602239 SLC15A5A6NIM6 579 aa19.01■□□□□ 0.63
SHKBP1-228ENST00000602239 COG2Q14746 738 aa19.01■□□□□ 0.63
SHKBP1-228ENST00000602239 CLEC10AQ8IUN9 316 aa19.01■□□□□ 0.63
SHKBP1-228ENST00000602239 NPLOC4Q8TAT6 608 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms