RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CCDC129Q6ZRS4 1044 aa23.05■■□□□ 1.28
UPF1-212ENST00000601689 FAM227BQ96M60 508 aa23.05■■□□□ 1.28
UPF1-212ENST00000601689 CPA4Q9UI42 421 aa23.05■■□□□ 1.28
UPF1-212ENST00000601689 LOC285556D6RIA3 1793 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 GNRH1P01148 92 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 CYP2C8P10632 490 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 PDE4AP27815 886 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 HOXD10P28358 340 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 GCLCP48506 637 aaPredicted RBP23.04■■□□□ 1.28
UPF1-212ENST00000601689 JAG1P78504 1218 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 CWC27Q6UX04 472 aaKnown RBP23.04■■□□□ 1.28
UPF1-212ENST00000601689 C17orf99Q6UX52 265 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 STK11IPQ8N1F8 1099 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 CD99L2Q8TCZ2 262 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 RUFY2Q8WXA3 655 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 KIAA1683Q9H0B3 1180 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 KANSL2Q9H9L4 492 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 EPB41L4AQ9HCS5 686 aaPredicted RBP23.04■■□□□ 1.28
UPF1-212ENST00000601689 CCDC171Q6TFL3 1326 aa23.04■■□□□ 1.28
UPF1-212ENST00000601689 A0A0D9SFI3 127 aa23.03■■□□□ 1.28
UPF1-212ENST00000601689 ICA1Q05084 483 aa23.03■■□□□ 1.28
UPF1-212ENST00000601689 PPARAQ07869 468 aa23.03■■□□□ 1.28
UPF1-212ENST00000601689 ZYXQ15942 572 aaKnown RBP23.03■■□□□ 1.28
UPF1-212ENST00000601689 TREML2Q5T2D2 321 aa23.03■■□□□ 1.28
UPF1-212ENST00000601689 GTF3C2Q8WUA4 911 aaPredicted RBP23.03■■□□□ 1.28
UPF1-212ENST00000601689 ROBO3Q96MS0 1386 aa23.02■■□□□ 1.28
UPF1-212ENST00000601689 AKR1B1P15121 316 aa23.02■■□□□ 1.28
UPF1-212ENST00000601689 HOXA7P31268 230 aaPredicted RBP23.02■■□□□ 1.28
UPF1-212ENST00000601689 EVX2Q03828 476 aa23.02■■□□□ 1.28
UPF1-212ENST00000601689 SHROOM1Q2M3G4 852 aaPredicted RBP23.02■■□□□ 1.28
UPF1-212ENST00000601689 PPP4R3BQ5MIZ7 849 aa23.02■■□□□ 1.28
UPF1-212ENST00000601689 IFFO2Q5TF58 517 aa23.02■■□□□ 1.28
UPF1-212ENST00000601689 FBXO46Q6PJ61 603 aaPredicted RBP23.02■■□□□ 1.28
UPF1-212ENST00000601689 C12orf42Q96LP6 360 aa23.02■■□□□ 1.28
UPF1-212ENST00000601689 LACTBP83111 547 aaPredicted RBP23.01■■□□□ 1.27
UPF1-212ENST00000601689 ATP2B2Q01814 1243 aa23.01■■□□□ 1.27
UPF1-212ENST00000601689 ALX1Q15699 326 aa23.01■■□□□ 1.27
UPF1-212ENST00000601689 ABHD8Q96I13 439 aa23.01■■□□□ 1.27
UPF1-212ENST00000601689 USP17L15C9J2P7 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L13C9JLJ4 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L11C9JVI0 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L18D6R9N7 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L22D6RA61 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L17D6RBQ6 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L19D6RCP7 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L20D6RJB6 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 FMNL1O95466 1100 aaPredicted RBP23■■□□□ 1.27
UPF1-212ENST00000601689 HSPD1P10809 573 aaKnown RBP23■■□□□ 1.27
UPF1-212ENST00000601689 PRMT2P55345 433 aa23■■□□□ 1.27
UPF1-212ENST00000601689 USP17L24Q0WX57 530 aa23■■□□□ 1.27
UPF1-212ENST00000601689 OTOP1Q7RTM1 612 aa23■■□□□ 1.27
UPF1-212ENST00000601689 ASCC2Q9H1I8 757 aaPredicted RBP23■■□□□ 1.27
UPF1-212ENST00000601689 TSPY3P0CV98 308 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 TSPY8P0CW00 308 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 GUCY1A2P33402 732 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 FCGRTP55899 365 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 ACER1Q8TDN7 264 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 LPAR1Q92633 364 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 GOPCQ9HD26 462 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 EMILIN3Q9NT22 766 aa22.99■■□□□ 1.27
UPF1-212ENST00000601689 BCRP11274 1271 aa22.98■■□□□ 1.27
UPF1-212ENST00000601689 RASA1P20936 1047 aa22.98■■□□□ 1.27
UPF1-212ENST00000601689 PSMC4P43686 418 aa22.98■■□□□ 1.27
UPF1-212ENST00000601689 FAM110CQ1W6H9 321 aa22.98■■□□□ 1.27
UPF1-212ENST00000601689 CCAR1Q8IX12 1150 aaKnown RBP22.98■■□□□ 1.27
UPF1-212ENST00000601689 ANKRD13CQ8N6S4 541 aa22.98■■□□□ 1.27
UPF1-212ENST00000601689 FGAP02671 866 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 VPS53Q5VIR6 699 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 ERICH6BQ5W0A0 696 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 TOMM22Q9NS69 142 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 CTNNA3Q9UI47 895 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 TMX2Q9Y320 296 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 ZMYM6O95789 1325 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 ADGRA2Q96PE1 1338 aa22.97■■□□□ 1.27
UPF1-212ENST00000601689 TSPY2A6NKD2 308 aa22.96■■□□□ 1.27
UPF1-212ENST00000601689 CCDC85CA6NKD9 419 aa22.96■■□□□ 1.27
UPF1-212ENST00000601689 RAD21O60216 631 aa22.96■■□□□ 1.27
UPF1-212ENST00000601689 PCP11498 1178 aaKnown RBP22.96■■□□□ 1.27
UPF1-212ENST00000601689 EEF2P13639 858 aaKnown RBP22.96■■□□□ 1.27
UPF1-212ENST00000601689 GSPT1P15170 499 aaKnown RBP22.96■■□□□ 1.27
UPF1-212ENST00000601689 VCAM1P19320 739 aa22.96■■□□□ 1.27
UPF1-212ENST00000601689 ZNF589Q86UQ0 364 aaPredicted RBP22.96■■□□□ 1.27
UPF1-212ENST00000601689 RNF41Q9H4P4 317 aaPredicted RBP22.96■■□□□ 1.27
UPF1-212ENST00000601689 ANAPC4Q9UJX5 808 aa22.96■■□□□ 1.27
UPF1-212ENST00000601689 RAD50Q92878 1312 aa22.96■■□□□ 1.27
UPF1-212ENST00000601689 SMIM22K7EJ46 135 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 ZNF213O14771 459 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 PRDM1O75626 825 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 CAPN15O75808 1086 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 HERVK_113P62684 666 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 NBPF11Q86T75 865 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 TANGO6Q9C0B7 1094 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 RPAP3Q9H6T3 665 aaPredicted RBP22.95■■□□□ 1.26
UPF1-212ENST00000601689 VCPKMTQ9H867 229 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 HOXC10Q9NYD6 342 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 NYAP2Q9P242 653 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 PTPN22Q9Y2R2 807 aa22.95■■□□□ 1.26
UPF1-212ENST00000601689 NT5C2P49902 561 aa22.94■■□□□ 1.26
UPF1-212ENST00000601689 TFAP4Q01664 338 aa22.94■■□□□ 1.26
UPF1-212ENST00000601689 CTDSPL2Q05D32 466 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms